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SMARCD2
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.1 nTPM
HPA:28.1 nTPM
GTEx:16.7 nTPM
FANTOM5:18.2 Scaled Tags Per Million
Pig:1.9 nTPM
Mouse:6.4 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 28.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 21.4
2289 Male, age 61, right hemisphere 22.8
2481 Female, age 94, left hemisphere 22.8
1781 Male, age 74, unknown 22.3
2288 Male, age 75, left hemisphere 22.1
2290 Female, age 72, unknown 21.0
1857 Female, age 85, left hemisphere 20.1
2846 Female, age 79, unknown 20.0
1854 Male, age 80, left hemisphere 19.8
Claustrum
nTPM: 22.2
2292 Female, age 85, both hemispheres 26.3
1956 Male, age 74, unknown 23.1
2196 Female, age 79, unknown 22.0
2284 Female, age 91, both hemispheres 21.7
2568 Male, age 61, both hemispheres 21.7
2645 Female, age 72, unknown 21.7
2392 Female, age 94, both hemispheres 21.4
2491 Male, age 75, both hemispheres 21.3
2198 Male, age 80, both hemispheres 20.9
Globus pallidus, externus
nTPM: 28.1
2567 Female, age 72, unknown 31.0
1996 Male, age 80, right hemisphere 29.3
2772 Female, age 79, unknown 28.6
2646 Male, age 61, right hemisphere 27.3
2395 Male, age 75, both hemispheres 24.3
Globus pallidus, internus
nTPM: 27.4
2778 Female, age 91, both hemispheres 33.8
2111 Female, age 85, right hemisphere 29.7
2566 Female, age 72, unknown 27.8
2037 Male, age 80, right hemisphere 27.0
1818 Male, age 74, unknown 26.6
2287 Male, age 75, right hemisphere 24.7
2483 Female, age 94, right hemisphere 22.3
Nucleus accumbens
nTPM: 20.9
2732 Male, age 80, right hemisphere 23.9
1783 Male, age 74, unknown 21.6
2286 Male, age 75, left hemisphere 21.1
1806 Female, age 85, left hemisphere 20.8
2391 Female, age 94, left hemisphere 20.8
2698 Female, age 72, unknown 20.6
2824 Male, age 61, right hemisphere 19.8
1856 Female, age 91, right hemisphere 18.4
Nucleus basalis of Meynert
nTPM: 23.3
2569 Male, age 61, both hemispheres 26.7
2484 Female, age 94, left hemisphere 24.2
2821 Male, age 75, both hemispheres 22.6
2393 Male, age 80, right hemisphere 19.9
Nucleus of the diagonal band
nTPM: 18.8
2029 Male, age 61, right hemisphere 20.0
1979 Male, age 74, unknown 19.3
1812 Female, age 91, both hemispheres 18.8
2195 Female, age 85, both hemispheres 18.4
2775 Male, age 80, right hemisphere 17.5
Olfactory tubercle
nTPM: 19.4
2856 Male, age 75, right hemisphere 20.1
2487 Female, age 94, left hemisphere 19.8
1998 Female, age 91, both hemispheres 19.3
1846 Male, age 80, right hemisphere 18.5
Putamen
nTPM: 21.7
2489 Female, age 72, unknown 24.5
2482 Female, age 94, left hemisphere 22.3
2647 Male, age 75, left hemisphere 22.1
1829 Male, age 74, unknown 21.8
2466 Female, age 79, unknown 21.8
1937 Female, age 91, right hemisphere 20.6
1838 Male, age 80, right hemisphere 18.9
Septal nuclei
nTPM: 19.9
2394 Male, age 61, left hemisphere 21.8
2059 Female, age 85, both hemispheres 21.7
2199 Male, age 80, right hemisphere 20.8
2629 Female, age 94, right hemisphere 19.2
2009 Female, age 91, both hemispheres 19.1
2031 Female, age 72, unknown 19.1
1960 Male, age 74, unknown 17.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 15.3
Samples: 246

Max nTPM: 32.7
Min nTPM: 6.8
Std nTPM: 3.9
Median nTPM: 14.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 32.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 26.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 26.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 25.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 25.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 24.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 23.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 23.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 23.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 22.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 22.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 14.2
Samples: 246

Max nTPM: 29.7
Min nTPM: 6.6
Std nTPM: 4.0
Median nTPM: 13.6
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 29.7
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 28.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 27.7
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 26.5
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 25.8
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 25.3
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 25.0
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 24.9
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 24.3
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 24.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 22.4
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Brain - Putamen (basal ganglia)
Average nTPM: 16.7
Samples: 205

Max nTPM: 34.3
Min nTPM: 8.9
Std nTPM: 4.2
Median nTPM: 15.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 34.3
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 32.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 31.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 28.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 27.8
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 26.1
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 25.4
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 25.1
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 24.8
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 24.2
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 24.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 12.1
FF:10164-103B2 76 years, female 12.1
Globus pallidus
Scaled Tags Per Million: 18.2
FF:10161-103A8 76 years, female 21.5
FF:10175-103C4 60 years, female 14.9
Nucleus accumbens
Scaled Tags Per Million: 13.2
FF:10037-101F1 23-56 years, mixed 13.2
Putamen
Scaled Tags Per Million: 11.1
FF:10176-103C5 60 years, female 11.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.9
Pig sample Sample description nTPM
Caudate
nTPM: 1.4
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.2
Sample A Female 1.5
Sample B Female 1.2
Sample C Male 1.7
Sample D Male 1.2
Putamen
nTPM: 1.4
Samples: 4

Max nTPM: 2.1
Min nTPM: 0.9
Sample A Female 2.1
Sample B Female 0.9
Sample C Male 1.3
Sample D Male 1.3
Septum
nTPM: 1.9
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.5
Sample A Female 2.5
Sample B Female 1.6
Sample C Male 1.5
Sample D Male 2.1
Ventral pallidum
nTPM: 1.5
Samples: 4

Max nTPM: 2.0
Min nTPM: 1.1
Sample A Female 1.1
Sample B Female 1.3
Sample C Male 2.0
Sample D Male 1.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 6.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 6.3
Samples: 4

Max nTPM: 8.7
Min nTPM: 4.8
Sample A Male 6.1
Sample B Male 5.7
Sample C Female 8.7
Sample D Female 4.8
Septum
nTPM: 6.0
Samples: 4

Max nTPM: 6.8
Min nTPM: 5.5
Sample A Male 5.8
Sample B Male 5.5
Sample C Female 6.8
Sample D Female 5.7
Ventral forebrain
nTPM: 6.5
Samples: 4

Max nTPM: 7.1
Min nTPM: 5.8
Sample A Male 7.1
Sample B Male 5.8
Sample C Female 7.1
Sample D Female 5.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
70539156 Antisense, RP_050324_01_A02, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
70539156 Antisense, RP_050324_01_A02, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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