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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:83.6 nTPM
HPA:83.6 nTPM
GTEx:62.4 nTPM
FANTOM5:1083.6 Scaled Tags Per Million
Pig:165.6 nTPM
Mouse:324.9 nTPM
Allen mouse:5.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA020043Antibody CAB005868
Glial cells Not detectedLow
Neuronal cells HighMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 83.6
Sample id Sample description nTPM
Hippocampus
nTPM: 71.6
2621 Female, age 67, right hemisphere 89.8
1911 Female, age 85, right hemisphere 76.2
2148 Female, age 91, left hemisphere 69.4
1898 Male, age 80, left hemisphere 65.9
2529 Female, age 94, left hemisphere 65.3
1855 Male, age 76, left hemisphere 63.2
Dentate gyrus
nTPM: 65.2
2531 Female, age 67, both hemispheres 81.7
2246 Female, age 85, both hemispheres 75.3
1927 Female, age 91, both hemispheres 63.7
2010 Male, age 76, both hemispheres 63.0
2530 Female, age 94, left hemisphere 57.0
2528 Male, age 74, both hemispheres 50.4
Entorhinal gyrus
nTPM: 69.1
2686 Male, age 75, right hemisphere 88.1
2613 Female, age 94, left hemisphere 83.0
1938 Female, age 85, left hemisphere 68.9
2117 Female, age 91, right hemisphere 59.3
2764 Male, age 80, right hemisphere 59.2
1787 Male, age 76, left hemisphere 56.3
Hippocampus, CA1
nTPM: 71.4
2749 Male, age 80, left hemisphere 85.5
1873 Female, age 85, both hemispheres 77.3
2045 Male, age 76, both hemispheres 72.4
2527 Male, age 74, both hemispheres 65.9
2082 Female, age 91, right hemisphere 55.7
Hippocampus, CA2
nTPM: 62.9
1892 Male, age 76, both hemispheres 71.8
1940 Female, age 85, left hemisphere 68.9
2437 Female, age 94, left hemisphere 63.7
1963 Male, age 80, left hemisphere 59.2
2113 Female, age 91, right hemisphere 57.5
2249 Male, age 74, both hemispheres 56.3
Hippocampus, CA3
nTPM: 83.6
2620 Female, age 94, left hemisphere 100.8
2436 Male, age 74, both hemispheres 95.3
2137 Male, age 80, left hemisphere 82.7
1867 Male, age 76, both hemispheres 82.6
2861 Female, age 67, both hemispheres 73.1
1891 Female, age 85, both hemispheres 67.1
Parahippocampal cortex
nTPM: 75.5
2693 Female, age 94, both hemispheres 96.0
2622 Female, age 67, right hemisphere 95.8
1850 Male, age 80, both hemispheres 81.1
2532 Female, age 72, left hemisphere 75.8
2245 Female, age 91, both hemispheres 74.5
1933 Female, age 85, both hemispheres 72.8
2692 Male, age 74, both hemispheres 72.1
2018 Male, age 76, both hemispheres 68.2
2250 Female, age 67, right hemisphere 62.8
1990 Female, age 91, right hemisphere 55.5
Perirhinal gyrus
nTPM: 70.2
1841 Female, age 85, right hemisphere 89.3
2521 Female, age 94, right hemisphere 73.9
1794 Male, age 80, right hemisphere 67.3
1847 Female, age 91, left hemisphere 63.6
2848 Male, age 76, right hemisphere 57.0
Subiculum
nTPM: 71.5
2042 Male, age 76, both hemispheres 87.3
1901 Male, age 80, both hemispheres 76.0
2438 Female, age 94, left hemisphere 75.0
2619 Male, age 74, both hemispheres 66.9
1977 Female, age 85, both hemispheres 66.8
2729 Female, age 91, right hemisphere 57.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 62.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 62.4
Samples: 197

Max nTPM: 111.7
Min nTPM: 31.1
Std nTPM: 16.7
Median nTPM: 60.7
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 111.7
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 107.6
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 103.1
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 102.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 101.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 100.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 98.8
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 98.8
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 97.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 96.3
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 95.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 1083.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1083.6
FF:10169-103B7 60 years, female 1343.5
FF:10153-102I9 76 years, female 823.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 165.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 165.6
Samples: 4

Max nTPM: 167.5
Min nTPM: 160.5
Sample A Female 167.0
Sample B Female 160.5
Sample C Male 167.5
Sample D Male 167.5
Entorhinal cortex
nTPM: 151.0
Samples: 4

Max nTPM: 160.0
Min nTPM: 141.2
Sample A Female 159.0
Sample B Female 160.0
Sample C Male 143.8
Sample D Male 141.2
Subiculum
nTPM: 154.6
Samples: 4

Max nTPM: 174.9
Min nTPM: 142.7
Sample A Female 174.9
Sample B Female 146.4
Sample C Male 154.5
Sample D Male 142.7
Ventral hippocampus
nTPM: 156.0
Samples: 4

Max nTPM: 173.4
Min nTPM: 148.2
Sample A Female 153.4
Sample B Female 149.0
Sample C Male 148.2
Sample D Male 173.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 324.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 317.3
Samples: 4

Max nTPM: 327.8
Min nTPM: 306.8
Sample A Male 312.9
Sample B Male 327.8
Sample C Female 306.8
Sample D Female 321.7
Hippocampal formation
nTPM: 324.9
Samples: 4

Max nTPM: 347.8
Min nTPM: 297.6
Sample A Male 306.6
Sample B Male 347.6
Sample C Female 347.8
Sample D Female 297.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.1
341 Antisense, RP_Baylor_102725, Mouse strain C57BL/6J (56 days, male) 10.3
340 Antisense, RP_Baylor_102725, Mouse strain C57BL/6J (56 days, male) 9.9
342 Sense, RPS_Baylor_36977, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.