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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.7 nTPM
HPA:2.7 nTPM
GTEx:1.0 nTPM
FANTOM5:16.3 Scaled Tags Per Million
Pig:23.3 nTPM
Mouse:13.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 2.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 2.5
1833 Male, age 53, unknown 3.3
1830 Male, age 51, unknown 3.2
1870 Female, age 42, unknown 3.1
2666 Male, age 74, left hemisphere 3.1
2219 Male, age 76, both hemispheres 3.0
2586 Male, age 75, left hemisphere 2.5
2411 Female, age 72, unknown 2.0
2828 Female, age 72, unknown 2.0
2019 Male, age 18, unknown 1.5
1827 Male, age 72, unknown 1.4
Dorsal raphe nucleus
nTPM: 2.2
2016 Female, age 72, unknown 3.5
2750 Male, age 76, both hemispheres 2.3
2047 Male, age 72, unknown 2.0
1828 Male, age 53, unknown 1.9
2298 Female, age 72, unknown 1.4
Inferior colliculus
nTPM: 2.2
2849 Male, age 72, unknown 3.2
1890 Male, age 53, unknown 2.4
1848 Female, age 42, unknown 2.1
2097 Female, age 72, unknown 1.2
Median raphe nucleus
nTPM: 2.1
2220 Male, age 76, midline 2.1
Pedunculopontine tegmental nucleus
nTPM: 2.2
2334 Male, age 80, both hemispheres 2.5
2338 Male, age 61, both hemispheres 2.5
1921 Female, age 85, both hemispheres 1.5
Periaquaductal grey, anterior
nTPM: 1.9
2502 Female, age 75, unknown 2.5
1947 Male, age 18, unknown 2.2
1795 Male, age 51, unknown 1.0
Periaquaductal grey, dorsal
nTPM: 2.6
2850 Male, age 76, both hemispheres 3.2
1840 Male, age 53, unknown 2.7
1831 Male, age 72, unknown 2.4
2464 Female, age 72, unknown 2.2
Periaquaductal grey, lateral
nTPM: 2.0
2053 Male, age 18, unknown 2.7
2140 Male, age 76, both hemispheres 2.4
2272 Male, age 74, both hemispheres 1.0
Pretectal area
nTPM: 1.4
2825 Male, age 18, unknown 2.6
1815 Male, age 53, unknown 1.8
1817 Female, age 42, unknown 1.5
2316 Male, age 76, right hemisphere 1.5
2224 Female, age 72, unknown 1.4
2407 Male, age 75, both hemispheres 1.4
1944 Female, age 72, unknown 1.2
2667 Female, age 75, unknown 1.2
1816 Male, age 51, unknown 0.9
2273 Male, age 74, both hemispheres 0.9
2007 Male, age 72, unknown 0.7
Red nucleus
nTPM: 2.7
1865 Male, age 51, unknown 3.7
1904 Male, age 53, unknown 3.4
1821 Female, age 72, unknown 3.0
2227 Male, age 72, unknown 3.0
1954 Female, age 42, unknown 2.8
2503 Female, age 72, unknown 2.8
2769 Male, age 72, unknown 2.7
2823 Male, age 76, right hemisphere 2.7
2584 Male, age 75, left hemisphere 2.4
2785 Male, age 18, unknown 2.3
2588 Male, age 74, left hemisphere 2.0
2725 Female, age 75, unknown 1.8
Substantia nigra
nTPM: 2.6
2409 Female, age 72, unknown 6.0
2590 Female, age 75, unknown 2.9
2699 Male, age 18, unknown 2.8
2241 Male, age 72, unknown 2.6
2583 Male, age 75, right hemisphere 2.6
1851 Male, age 51, unknown 2.5
2665 Male, age 74, both hemispheres 2.4
1916 Female, age 42, unknown 2.1
1889 Female, age 72, unknown 1.3
1941 Male, age 53, unknown 0.9
Superior colliculus
nTPM: 2.3
1995 Male, age 72, unknown 3.3
1895 Male, age 76, right hemisphere 3.1
1913 Female, age 42, unknown 3.1
2668 Female, age 75, unknown 2.4
1839 Male, age 51, unknown 2.3
2664 Male, age 75, both hemispheres 2.2
2587 Male, age 74, left hemisphere 2.1
1796 Male, age 53, unknown 1.7
2087 Female, age 72, unknown 1.4
2261 Male, age 18, unknown 1.2
Ventral tegmental area
nTPM: 2.2
2223 Female, age 72, unknown 3.1
2021 Male, age 53, unknown 2.5
1915 Female, age 42, unknown 2.3
1942 Male, age 51, unknown 2.1
2218 Male, age 76, both hemispheres 1.8
2410 Female, age 72, unknown 1.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.0
Samples: 139

Max nTPM: 2.8
Min nTPM: 0.0
Std nTPM: 0.5
Median nTPM: 0.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 2.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 2.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 2.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 2.3
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 2.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 2.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 2.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 2.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 2.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 2.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 2.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.3
FF:10158-103A5 76 years, female 16.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.3
Pig sample Sample description nTPM
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 27.3
Min nTPM: 19.3
Sample A Female 22.5
Sample B Female 27.3
Sample C Male 20.1
Sample D Male 19.3
Periaqueductal gray
nTPM: 23.3
Samples: 3

Max nTPM: 25.2
Min nTPM: 22.2
Sample B Female 25.2
Sample C Male 22.2
Sample D Male 22.4
Substantia nigra
nTPM: 23.3
Samples: 4

Max nTPM: 25.5
Min nTPM: 21.8
Sample A Female 22.9
Sample B Female 25.5
Sample C Male 21.8
Sample D Male 23.0
Superior colliculi
nTPM: 20.6
Samples: 4

Max nTPM: 22.3
Min nTPM: 18.5
Sample A Female 21.9
Sample B Female 22.3
Sample C Male 18.5
Sample D Male 19.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.6
Samples: 4

Max nTPM: 14.3
Min nTPM: 11.8
Sample A Male 11.8
Sample B Male 14.2
Sample C Female 14.3
Sample D Female 14.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69874198 Antisense, RP_050512_02_H03, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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