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CDR2L
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.9 nTPM
HPA:33.9 nTPM
GTEx:24.0 nTPM
FANTOM5:92.0 Scaled Tags Per Million
Pig:46.0 nTPM
Mouse:13.3 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.8
2019 Male, age 18, unknown 44.9
2586 Male, age 75, left hemisphere 28.8
2411 Female, age 72, unknown 28.4
1830 Male, age 51, unknown 27.4
2666 Male, age 74, left hemisphere 26.3
1833 Male, age 53, unknown 25.2
1870 Female, age 42, unknown 24.0
2219 Male, age 76, both hemispheres 23.1
2828 Female, age 72, unknown 21.9
1827 Male, age 72, unknown 17.8
Dorsal raphe nucleus
nTPM: 20.6
2750 Male, age 76, both hemispheres 29.5
1828 Male, age 53, unknown 24.3
2047 Male, age 72, unknown 19.0
2016 Female, age 72, unknown 17.4
2298 Female, age 72, unknown 12.9
Inferior colliculus
nTPM: 18.4
1890 Male, age 53, unknown 20.8
1848 Female, age 42, unknown 18.8
2097 Female, age 72, unknown 17.5
2849 Male, age 72, unknown 16.5
Median raphe nucleus
nTPM: 15.7
2220 Male, age 76, midline 15.7
Pedunculopontine tegmental nucleus
nTPM: 22.1
2334 Male, age 80, both hemispheres 23.7
2338 Male, age 61, both hemispheres 21.4
1921 Female, age 85, both hemispheres 21.1
Periaquaductal grey, anterior
nTPM: 16.1
2502 Female, age 75, unknown 16.7
1795 Male, age 51, unknown 16.5
1947 Male, age 18, unknown 15.2
Periaquaductal grey, dorsal
nTPM: 13.8
2464 Female, age 72, unknown 18.9
1831 Male, age 72, unknown 15.6
2850 Male, age 76, both hemispheres 11.9
1840 Male, age 53, unknown 8.7
Periaquaductal grey, lateral
nTPM: 14.3
2272 Male, age 74, both hemispheres 16.8
2053 Male, age 18, unknown 14.1
2140 Male, age 76, both hemispheres 11.9
Pretectal area
nTPM: 22.0
2007 Male, age 72, unknown 35.5
1817 Female, age 42, unknown 30.4
1944 Female, age 72, unknown 27.8
1815 Male, age 53, unknown 26.5
1816 Male, age 51, unknown 24.6
2407 Male, age 75, both hemispheres 20.9
2316 Male, age 76, right hemisphere 20.4
2667 Female, age 75, unknown 15.6
2273 Male, age 74, both hemispheres 14.8
2825 Male, age 18, unknown 14.1
2224 Female, age 72, unknown 11.7
Red nucleus
nTPM: 33.9
2785 Male, age 18, unknown 44.1
2588 Male, age 74, left hemisphere 38.2
2769 Male, age 72, unknown 36.4
2227 Male, age 72, unknown 35.3
2823 Male, age 76, right hemisphere 34.3
1865 Male, age 51, unknown 34.1
2503 Female, age 72, unknown 33.0
1904 Male, age 53, unknown 32.1
2584 Male, age 75, left hemisphere 31.6
1954 Female, age 42, unknown 31.3
1821 Female, age 72, unknown 30.2
2725 Female, age 75, unknown 25.5
Substantia nigra
nTPM: 19.8
1941 Male, age 53, unknown 27.8
2583 Male, age 75, right hemisphere 27.6
1889 Female, age 72, unknown 26.6
2590 Female, age 75, unknown 21.4
2409 Female, age 72, unknown 18.6
1851 Male, age 51, unknown 18.2
1916 Female, age 42, unknown 15.8
2665 Male, age 74, both hemispheres 15.8
2699 Male, age 18, unknown 14.3
2241 Male, age 72, unknown 11.8
Superior colliculus
nTPM: 23.5
2668 Female, age 75, unknown 34.4
1995 Male, age 72, unknown 27.4
1913 Female, age 42, unknown 26.2
2087 Female, age 72, unknown 26.1
1895 Male, age 76, right hemisphere 23.1
2261 Male, age 18, unknown 21.7
1839 Male, age 51, unknown 20.8
2587 Male, age 74, left hemisphere 20.2
2664 Male, age 75, both hemispheres 17.6
1796 Male, age 53, unknown 17.1
Ventral tegmental area
nTPM: 20.0
2223 Female, age 72, unknown 27.5
2410 Female, age 72, unknown 24.2
2218 Male, age 76, both hemispheres 17.9
1942 Male, age 51, unknown 17.4
2021 Male, age 53, unknown 16.9
1915 Female, age 42, unknown 16.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.0
Samples: 139

Max nTPM: 75.4
Min nTPM: 5.9
Std nTPM: 11.5
Median nTPM: 22.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 75.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 74.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 56.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 56.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 53.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 47.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 43.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 42.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 41.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 41.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 39.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.0
FF:10158-103A5 76 years, female 92.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.0
Pig sample Sample description nTPM
Midbrain
nTPM: 46.0
Samples: 4

Max nTPM: 76.8
Min nTPM: 35.3
Sample A Female 76.8
Sample B Female 36.4
Sample C Male 35.3
Sample D Male 35.3
Periaqueductal gray
nTPM: 28.2
Samples: 3

Max nTPM: 31.7
Min nTPM: 25.3
Sample B Female 31.7
Sample C Male 25.3
Sample D Male 27.6
Substantia nigra
nTPM: 41.5
Samples: 4

Max nTPM: 53.7
Min nTPM: 26.6
Sample A Female 53.7
Sample B Female 26.6
Sample C Male 32.5
Sample D Male 53.0
Superior colliculi
nTPM: 45.4
Samples: 4

Max nTPM: 55.0
Min nTPM: 25.3
Sample A Female 55.0
Sample B Female 25.3
Sample C Male 54.5
Sample D Male 46.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.3
Samples: 4

Max nTPM: 13.6
Min nTPM: 12.8
Sample A Male 12.8
Sample B Male 13.6
Sample C Female 13.5
Sample D Female 13.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69608402 Antisense, RP_050426_04_A09, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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