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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.9 nTPM
HPA:33.9 nTPM
GTEx:26.5 nTPM
FANTOM5:48.2 Scaled Tags Per Million
Pig:43.6 nTPM
Mouse:43.6 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.8
2586 Male, age 75, left hemisphere 36.4
2666 Male, age 74, left hemisphere 30.9
2828 Female, age 72, unknown 28.8
1827 Male, age 72, unknown 28.1
1870 Female, age 42, unknown 27.6
2411 Female, age 72, unknown 26.1
1830 Male, age 51, unknown 26.0
1833 Male, age 53, unknown 25.5
2219 Male, age 76, both hemispheres 25.0
2019 Male, age 18, unknown 23.8
Dorsal raphe nucleus
nTPM: 27.1
2016 Female, age 72, unknown 31.3
2047 Male, age 72, unknown 27.7
1828 Male, age 53, unknown 26.6
2298 Female, age 72, unknown 26.0
2750 Male, age 76, both hemispheres 23.7
Inferior colliculus
nTPM: 29.0
1848 Female, age 42, unknown 29.8
2849 Male, age 72, unknown 29.3
2097 Female, age 72, unknown 28.6
1890 Male, age 53, unknown 28.4
Median raphe nucleus
nTPM: 22.3
2220 Male, age 76, midline 22.3
Pedunculopontine tegmental nucleus
nTPM: 23.2
2334 Male, age 80, both hemispheres 25.2
1921 Female, age 85, both hemispheres 24.7
2338 Male, age 61, both hemispheres 19.8
Periaquaductal grey, anterior
nTPM: 33.9
1947 Male, age 18, unknown 39.6
2502 Female, age 75, unknown 32.2
1795 Male, age 51, unknown 29.9
Periaquaductal grey, dorsal
nTPM: 29.2
1840 Male, age 53, unknown 34.0
2464 Female, age 72, unknown 28.4
1831 Male, age 72, unknown 28.0
2850 Male, age 76, both hemispheres 26.3
Periaquaductal grey, lateral
nTPM: 26.9
2053 Male, age 18, unknown 30.7
2272 Male, age 74, both hemispheres 25.4
2140 Male, age 76, both hemispheres 24.6
Pretectal area
nTPM: 27.2
2407 Male, age 75, both hemispheres 31.3
2825 Male, age 18, unknown 30.2
1816 Male, age 51, unknown 27.7
2667 Female, age 75, unknown 27.5
1815 Male, age 53, unknown 27.3
1817 Female, age 42, unknown 27.1
1944 Female, age 72, unknown 26.4
2273 Male, age 74, both hemispheres 25.9
2224 Female, age 72, unknown 25.8
2007 Male, age 72, unknown 25.3
2316 Male, age 76, right hemisphere 24.4
Red nucleus
nTPM: 27.9
2584 Male, age 75, left hemisphere 30.8
1821 Female, age 72, unknown 30.2
2503 Female, age 72, unknown 30.2
1954 Female, age 42, unknown 29.6
2588 Male, age 74, left hemisphere 29.4
1904 Male, age 53, unknown 28.5
2769 Male, age 72, unknown 28.3
2227 Male, age 72, unknown 28.1
1865 Male, age 51, unknown 27.8
2725 Female, age 75, unknown 25.1
2823 Male, age 76, right hemisphere 24.4
2785 Male, age 18, unknown 22.4
Substantia nigra
nTPM: 27.5
2583 Male, age 75, right hemisphere 31.5
2665 Male, age 74, both hemispheres 29.8
2241 Male, age 72, unknown 29.0
2590 Female, age 75, unknown 29.0
1889 Female, age 72, unknown 27.9
1851 Male, age 51, unknown 27.7
2699 Male, age 18, unknown 26.1
1916 Female, age 42, unknown 26.0
2409 Female, age 72, unknown 24.1
1941 Male, age 53, unknown 24.0
Superior colliculus
nTPM: 28.6
2664 Male, age 75, both hemispheres 36.3
2668 Female, age 75, unknown 30.3
2587 Male, age 74, left hemisphere 29.8
2261 Male, age 18, unknown 29.3
1796 Male, age 53, unknown 28.5
1839 Male, age 51, unknown 28.2
2087 Female, age 72, unknown 27.1
1995 Male, age 72, unknown 26.9
1895 Male, age 76, right hemisphere 24.7
1913 Female, age 42, unknown 24.4
Ventral tegmental area
nTPM: 26.9
1942 Male, age 51, unknown 30.6
2021 Male, age 53, unknown 28.4
2223 Female, age 72, unknown 27.5
1915 Female, age 42, unknown 26.6
2410 Female, age 72, unknown 25.4
2218 Male, age 76, both hemispheres 22.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.5
Samples: 139

Max nTPM: 51.8
Min nTPM: 10.3
Std nTPM: 8.7
Median nTPM: 25.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 51.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 51.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 50.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 47.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 45.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 45.0
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 43.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 42.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 41.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 39.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 39.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.2
FF:10158-103A5 76 years, female 48.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.6
Pig sample Sample description nTPM
Midbrain
nTPM: 43.6
Samples: 4

Max nTPM: 56.5
Min nTPM: 37.5
Sample A Female 41.8
Sample B Female 38.5
Sample C Male 56.5
Sample D Male 37.5
Periaqueductal gray
nTPM: 34.5
Samples: 3

Max nTPM: 37.5
Min nTPM: 29.7
Sample B Female 37.5
Sample C Male 36.4
Sample D Male 29.7
Substantia nigra
nTPM: 37.4
Samples: 4

Max nTPM: 44.9
Min nTPM: 32.7
Sample A Female 44.9
Sample B Female 33.0
Sample C Male 38.8
Sample D Male 32.7
Superior colliculi
nTPM: 42.2
Samples: 4

Max nTPM: 53.5
Min nTPM: 32.6
Sample A Female 43.2
Sample B Female 32.6
Sample C Male 53.5
Sample D Male 39.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.6
Samples: 4

Max nTPM: 44.8
Min nTPM: 42.2
Sample A Male 42.6
Sample B Male 44.8
Sample C Female 44.7
Sample D Female 42.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
70805955 Antisense, RP_050725_02_E06, Mouse strain C57BL/6J (56 days, male) 1.1
68162264 Antisense, RP_041122_02_F10, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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