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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:30.8 nTPM
HPA:30.8 nTPM
GTEx:27.0 nTPM
FANTOM5:67.0 Scaled Tags Per Million
Pig:58.6 nTPM
Mouse:66.3 nTPM
Allen mouse:5.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA007288
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 30.8
Sample id Sample description nTPM
Hippocampus
nTPM: 26.9
1898 Male, age 80, left hemisphere 31.7
1911 Female, age 85, right hemisphere 30.1
2529 Female, age 94, left hemisphere 27.3
1855 Male, age 76, left hemisphere 24.6
2148 Female, age 91, left hemisphere 23.8
2621 Female, age 67, right hemisphere 23.5
Dentate gyrus
nTPM: 26.0
1927 Female, age 91, both hemispheres 27.8
2246 Female, age 85, both hemispheres 27.7
2530 Female, age 94, left hemisphere 27.5
2010 Male, age 76, both hemispheres 25.9
2528 Male, age 74, both hemispheres 24.1
2531 Female, age 67, both hemispheres 23.0
Entorhinal gyrus
nTPM: 26.6
1787 Male, age 76, left hemisphere 28.6
1938 Female, age 85, left hemisphere 28.1
2686 Male, age 75, right hemisphere 27.1
2764 Male, age 80, right hemisphere 26.1
2117 Female, age 91, right hemisphere 25.9
2613 Female, age 94, left hemisphere 23.5
Hippocampus, CA1
nTPM: 28.9
2749 Male, age 80, left hemisphere 43.7
1873 Female, age 85, both hemispheres 29.3
2082 Female, age 91, right hemisphere 25.1
2527 Male, age 74, both hemispheres 24.4
2045 Male, age 76, both hemispheres 21.8
Hippocampus, CA2
nTPM: 28.7
1892 Male, age 76, both hemispheres 35.3
1963 Male, age 80, left hemisphere 30.4
1940 Female, age 85, left hemisphere 29.3
2113 Female, age 91, right hemisphere 26.9
2249 Male, age 74, both hemispheres 25.1
2437 Female, age 94, left hemisphere 25.1
Hippocampus, CA3
nTPM: 28.9
2137 Male, age 80, left hemisphere 44.8
1867 Male, age 76, both hemispheres 32.8
1891 Female, age 85, both hemispheres 27.8
2436 Male, age 74, both hemispheres 23.1
2861 Female, age 67, both hemispheres 23.1
2620 Female, age 94, left hemisphere 22.1
Parahippocampal cortex
nTPM: 27.1
1850 Male, age 80, both hemispheres 32.2
1933 Female, age 85, both hemispheres 30.1
2250 Female, age 67, right hemisphere 27.4
1990 Female, age 91, right hemisphere 26.6
2245 Female, age 91, both hemispheres 26.6
2692 Male, age 74, both hemispheres 25.8
2693 Female, age 94, both hemispheres 25.8
2018 Male, age 76, both hemispheres 25.6
2532 Female, age 72, left hemisphere 25.3
2622 Female, age 67, right hemisphere 25.1
Perirhinal gyrus
nTPM: 30.8
1841 Female, age 85, right hemisphere 33.1
1794 Male, age 80, right hemisphere 32.0
1847 Female, age 91, left hemisphere 31.2
2848 Male, age 76, right hemisphere 30.7
2521 Female, age 94, right hemisphere 26.9
Subiculum
nTPM: 27.4
1901 Male, age 80, both hemispheres 32.6
1977 Female, age 85, both hemispheres 28.8
2438 Female, age 94, left hemisphere 28.1
2042 Male, age 76, both hemispheres 27.3
2729 Female, age 91, right hemisphere 24.8
2619 Male, age 74, both hemispheres 22.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 27.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 27.0
Samples: 197

Max nTPM: 57.1
Min nTPM: 4.7
Std nTPM: 6.9
Median nTPM: 26.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 57.1
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 47.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 45.3
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 44.0
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 41.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 40.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 40.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 40.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 39.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 39.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 38.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 67.0
FF:10153-102I9 76 years, female 75.4
FF:10169-103B7 60 years, female 58.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 58.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 39.9
Samples: 4

Max nTPM: 43.6
Min nTPM: 35.6
Sample A Female 43.6
Sample B Female 41.8
Sample C Male 38.5
Sample D Male 35.6
Entorhinal cortex
nTPM: 58.6
Samples: 4

Max nTPM: 65.4
Min nTPM: 49.7
Sample A Female 59.7
Sample B Female 65.4
Sample C Male 59.4
Sample D Male 49.7
Subiculum
nTPM: 49.3
Samples: 4

Max nTPM: 62.3
Min nTPM: 43.3
Sample A Female 62.3
Sample B Female 47.5
Sample C Male 44.0
Sample D Male 43.3
Ventral hippocampus
nTPM: 40.4
Samples: 4

Max nTPM: 47.4
Min nTPM: 36.0
Sample A Female 40.8
Sample B Female 37.5
Sample C Male 47.4
Sample D Male 36.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 66.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 65.7
Samples: 4

Max nTPM: 78.1
Min nTPM: 61.2
Sample A Male 61.5
Sample B Male 61.8
Sample C Female 61.2
Sample D Female 78.1
Hippocampal formation
nTPM: 66.3
Samples: 4

Max nTPM: 70.3
Min nTPM: 58.2
Sample A Male 68.5
Sample B Male 68.3
Sample C Female 70.3
Sample D Female 58.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.6
70805955 Antisense, RP_050725_02_E06, Mouse strain C57BL/6J (56 days, male) 7.7
68162264 Antisense, RP_041122_02_F10, Mouse strain C57BL/6J (56 days, male) 3.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.