Single cell type - BST1 - The Human Protein Atlas

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	BST1
Gene descriptionⁱ Full gene name according to HGNC.	Bone marrow stromal cell antigen 1
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	CD markers Enzymes FDA approved drug targets Metabolic proteins Plasma proteins
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	5

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type expression clusterⁱ The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity. Read more	Monocytes & Neutrophils - Innate immune response (mainly)
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (monocytes, Proximal enterocytes, Hofbauer cells, Macrophages)
Immune cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Immune cell enhanced (neutrophil, classical monocyte)
Immune cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in many
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines. Read more	Cell line enhanced (THP-1, TIME, U-937, WM-115)
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines. Read more	Detected in many
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (nTPM) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (monocytes, Proximal enterocytes, Hofbauer cells, Macrophages)

SINGLE CELL TISSUES OVERVIEWⁱ An overview of all tissues where single cell type expression has been analyzed. Each tissue name and corresponding UMAP plot is clickable and redirects to the selected tissue.
Adipose tissue Bone marrow Brain Breast Bronchus Colon Endometrium Esophagus Eye Heart muscle Kidney Liver Lung Lymph node Ovary Pancreas Placenta Prostate Rectum Skeletal muscle Skin Small intestine Spleen Stomach Testis

EXPRESSION CLUSTERING & CORRELATIONⁱ

BST1 is part of cluster 19 Monocytes & Neutrophils - Innate immune response with confidenceⁱ 1
175 genes in cluster

Go to interactive expression cluster page

15 nearest neighbours based on single cell type RNA expression

Neighbourⁱ Gene name according to HGNC.	Descriptionⁱ Gene description according to HGNC.	Correlationⁱ Correlation between the selected gene and neighboring gene. Correlation is calculated as Spearman correlation in PCA space based on the RNA-seq expression data. Read more	Clusterⁱ ID of the expression cluster of the neighboring gene. Read more
CLEC4D	C-type lectin domain family 4 member D	0.7258	19
FCN1	Ficolin 1	0.7167	19
PRAM1	PML-RARA regulated adaptor molecule 1	0.7152	19
S100A12	S100 calcium binding protein A12	0.7148	19
CLEC12A	C-type lectin domain family 12 member A	0.7126	19
LILRA2	Leukocyte immunoglobulin like receptor A2	0.7118	19
MNDA	Myeloid cell nuclear differentiation antigen	0.7064	19
TLR8	Toll like receptor 8	0.7000	19
RNASE2	Ribonuclease A family member 2	0.6917	19
SIRPB1	Signal regulatory protein beta 1	0.6852	19
HPSE	Heparanase	0.6833	19
LILRA1	Leukocyte immunoglobulin like receptor A1	0.6669	19
NFAM1	NFAT activating protein with ITAM motif 1	0.6655	19
NLRP12	NLR family pyrin domain containing 12	0.6641	19
CTSS	Cathepsin S	0.6626	19

SINGLE CELL TISSUESⁱ Single cell RNA levels of annotated cell type clusters are shown separately for each analyzed tissue. For easier navigation across tissues, use the above Single cell tissue overview, where each tissue name and UMAP plot is clickable and redirects to the selected tissue, alternatively the grey browser on the left side of the window. Barchart shows nTPM levels in each annotated cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Adipose tissue
Cluster Expression Alphabetical Bone marrow
Cluster Expression Alphabetical Brain
Cluster Expression Alphabetical Breast
Cluster Expression Alphabetical Bronchus
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Endometrium
Cluster Expression Alphabetical Esophagus
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Lymph node
Cluster Expression Alphabetical Ovary
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skeletal muscle
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Spleen
Cluster Expression Alphabetical Stomach
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ

Organ

Expression

Alphabetical

Adipocytes	5.4 nTPM
Breast	7.1 nTPM
Adipose tissue	3.6 nTPM

Alveolar cells type 1	3.2 nTPM
Lung	3.2 nTPM

Alveolar cells type 2	3.7 nTPM
Lung	3.7 nTPM

Astrocytes	1.3 nTPM
Brain	1.3 nTPM

B-cells	0.3 nTPM
PBMC	1.4 nTPM
Liver	0.9 nTPM
Bone marrow	0.8 nTPM
Spleen	0.3 nTPM
Colon	0.0 nTPM
Kidney	0.0 nTPM
Adipose tissue	0.0 nTPM
Lymph node	0.0 nTPM
Stomach	0.0 nTPM
Breast	0.0 nTPM

Dendritic cells	5.5 nTPM
PBMC	16.0 nTPM
Breast	0.4 nTPM
Adipose tissue	0.3 nTPM

Endothelial cells	3.8 nTPM
Skin	10.4 nTPM
Breast	7.6 nTPM
Heart muscle	7.4 nTPM
Skeletal muscle	7.0 nTPM
Lung	6.2 nTPM
Esophagus	3.7 nTPM
Placenta	2.2 nTPM
Testis	2.1 nTPM
Prostate	2.0 nTPM
Ovary	1.9 nTPM
Endometrium	1.5 nTPM
Liver	0.9 nTPM
Eye	0.8 nTPM
Pancreas	0.0 nTPM

Fibroblasts	22.5 nTPM
Adipose tissue	42.1 nTPM
Placenta	39.4 nTPM
Esophagus	31.4 nTPM
Breast	25.3 nTPM
Skin	24.6 nTPM
Skeletal muscle	22.4 nTPM
Prostate	18.4 nTPM
Stomach	14.9 nTPM
Heart muscle	11.6 nTPM
Ovary	11.5 nTPM
Lung	5.6 nTPM

Intestinal goblet cells	8.1 nTPM
Small intestine	13.8 nTPM
Rectum	9.8 nTPM
Colon	0.7 nTPM

Macrophages	33.3 nTPM
Stomach	90.8 nTPM
Skeletal muscle	58.5 nTPM
Kidney	53.7 nTPM
Bone marrow	43.7 nTPM
Spleen	42.5 nTPM
Lung	38.7 nTPM
Testis	34.3 nTPM
Pancreas	33.2 nTPM
Adipose tissue	23.9 nTPM
Esophagus	22.0 nTPM
Endometrium	18.5 nTPM
Ovary	18.3 nTPM
Prostate	13.8 nTPM
Breast	7.2 nTPM
PBMC	0.0 nTPM

Paneth cells	11.9 nTPM
Rectum	28.1 nTPM
Small intestine	7.5 nTPM
Colon	0.0 nTPM

Plasma cells	0.4 nTPM
Adipose tissue	1.3 nTPM
Stomach	0.5 nTPM
Esophagus	0.0 nTPM
Bone marrow	0.0 nTPM
Spleen	0.0 nTPM

Respiratory ciliated cells	3.0 nTPM
Bronchus	3.1 nTPM
Lung	2.9 nTPM

Smooth muscle cells	15.5 nTPM
Skeletal muscle	39.4 nTPM
Heart muscle	22.5 nTPM
Adipose tissue	20.4 nTPM
Ovary	19.4 nTPM
Breast	16.4 nTPM
Skin	15.3 nTPM
Pancreas	12.6 nTPM
Prostate	9.1 nTPM
Endometrium	7.6 nTPM
Esophagus	6.2 nTPM
Bronchus	1.9 nTPM

T-cells	1.8 nTPM
Prostate	14.2 nTPM
Lung	4.5 nTPM
PBMC	2.9 nTPM
Skin	2.3 nTPM
Kidney	2.0 nTPM
Endometrium	1.9 nTPM
Skeletal muscle	1.5 nTPM
Breast	0.6 nTPM
Adipose tissue	0.3 nTPM
Liver	0.2 nTPM
Bone marrow	0.1 nTPM
Colon	0.0 nTPM
Ovary	0.0 nTPM
Esophagus	0.0 nTPM
Lymph node	0.0 nTPM
Spleen	0.0 nTPM
Stomach	0.0 nTPM

Basal keratinocytes	4.6 nTPM
Skin	4.6 nTPM

Cholangiocytes	2.8 nTPM
Liver	2.8 nTPM

Early spermatids	4.4 nTPM
Testis	4.4 nTPM

Exocrine glandular cells	2.5 nTPM
Pancreas	2.5 nTPM

Undifferentiated cells	23.2 nTPM
Small intestine	46.7 nTPM
Rectum	19.4 nTPM
Colon	3.4 nTPM

Adipose tissue

Bone marrow

Brain

Breast

Bronchus

Colon

Endometrium

Esophagus

Eye

Heart muscle

Kidney

Liver

Lung

Lymph node

Ovary

Pancreas

Placenta

Prostate

Rectum

Skeletal muscle

Skin

Small intestine

Spleen

Stomach

Testis

PBMC