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RAPGEF2
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.8 nTPM
HPA:19.8 nTPM
GTEx:18.9 nTPM
FANTOM5:70.5 Scaled Tags Per Million
Pig:29.0 nTPM
Mouse:39.5 nTPM
Allen mouse:1.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 19.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.3
1781 Male, age 74, unknown 5.5
2288 Male, age 75, left hemisphere 5.0
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 11.1
2198 Male, age 80, both hemispheres 18.8
1956 Male, age 74, unknown 18.3
2392 Female, age 94, both hemispheres 17.7
2284 Female, age 91, both hemispheres 14.3
2196 Female, age 79, unknown 11.2
2491 Male, age 75, both hemispheres 8.4
2568 Male, age 61, both hemispheres 5.5
2645 Female, age 72, unknown 3.6
2292 Female, age 85, both hemispheres 1.9
Globus pallidus, externus
nTPM: 1.0
2395 Male, age 75, both hemispheres 4.0
2772 Female, age 79, unknown 1.4
1996 Male, age 80, right hemisphere 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
Globus pallidus, internus
nTPM: 2.1
2287 Male, age 75, right hemisphere 14.7
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 3.2
2286 Male, age 75, left hemisphere 8.4
1856 Female, age 91, right hemisphere 6.4
2698 Female, age 72, unknown 5.7
1783 Male, age 74, unknown 3.7
2391 Female, age 94, left hemisphere 2.0
1806 Female, age 85, left hemisphere 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.1
2821 Male, age 75, both hemispheres 0.4
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 19.8
2775 Male, age 80, right hemisphere 28.6
2029 Male, age 61, right hemisphere 26.2
2195 Female, age 85, both hemispheres 22.5
1812 Female, age 91, both hemispheres 21.9
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 19.6
1846 Male, age 80, right hemisphere 28.4
1998 Female, age 91, both hemispheres 24.0
2487 Female, age 94, left hemisphere 15.2
2856 Male, age 75, right hemisphere 10.8
Putamen
nTPM: 0.4
2482 Female, age 94, left hemisphere 2.2
2647 Male, age 75, left hemisphere 0.5
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
1937 Female, age 91, right hemisphere 0.0
2466 Female, age 79, unknown 0.0
2489 Female, age 72, unknown 0.0
Septal nuclei
nTPM: 13.7
2031 Female, age 72, unknown 36.6
1960 Male, age 74, unknown 21.5
2629 Female, age 94, right hemisphere 19.9
2009 Female, age 91, both hemispheres 15.4
2059 Female, age 85, both hemispheres 2.4
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 18.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 17.9
Samples: 246

Max nTPM: 53.7
Min nTPM: 8.2
Std nTPM: 4.4
Median nTPM: 17.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 53.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 28.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 28.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 28.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 27.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 26.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 26.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 26.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 25.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 25.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 25.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 18.9
Samples: 246

Max nTPM: 43.8
Min nTPM: 7.9
Std nTPM: 5.4
Median nTPM: 18.3
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 43.8
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 36.2
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 33.9
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 33.6
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 33.5
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 31.0
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 30.7
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 30.3
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 29.7
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 29.4
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 29.3
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Brain - Putamen (basal ganglia)
Average nTPM: 16.2
Samples: 205

Max nTPM: 26.6
Min nTPM: 7.5
Std nTPM: 3.5
Median nTPM: 16.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 26.6
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 25.8
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 24.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 23.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 23.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 23.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 23.4
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 23.3
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 22.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 22.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 22.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 55.7
FF:10164-103B2 76 years, female 55.7
Globus pallidus
Scaled Tags Per Million: 40.1
FF:10161-103A8 76 years, female 40.8
FF:10175-103C4 60 years, female 39.4
Nucleus accumbens
Scaled Tags Per Million: 70.5
FF:10037-101F1 23-56 years, mixed 70.5
Putamen
Scaled Tags Per Million: 63.7
FF:10176-103C5 60 years, female 63.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 29.0
Pig sample Sample description nTPM
Caudate
nTPM: 25.4
Samples: 4

Max nTPM: 27.2
Min nTPM: 24.2
Sample A Female 24.2
Sample B Female 25.1
Sample C Male 27.2
Sample D Male 25.2
Putamen
nTPM: 25.0
Samples: 4

Max nTPM: 26.9
Min nTPM: 23.0
Sample A Female 25.1
Sample B Female 23.0
Sample C Male 26.9
Sample D Male 24.9
Septum
nTPM: 26.9
Samples: 4

Max nTPM: 31.0
Min nTPM: 22.9
Sample A Female 31.0
Sample B Female 28.8
Sample C Male 22.9
Sample D Male 24.8
Ventral pallidum
nTPM: 29.1
Samples: 4

Max nTPM: 31.1
Min nTPM: 27.3
Sample A Female 31.1
Sample B Female 27.3
Sample C Male 28.0
Sample D Male 29.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 39.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 39.6
Samples: 4

Max nTPM: 42.5
Min nTPM: 37.3
Sample A Male 38.2
Sample B Male 37.3
Sample C Female 42.5
Sample D Female 40.2
Septum
nTPM: 27.6
Samples: 4

Max nTPM: 30.4
Min nTPM: 24.2
Sample A Male 30.2
Sample B Male 25.5
Sample C Female 24.2
Sample D Female 30.4
Ventral forebrain
nTPM: 36.8
Samples: 4

Max nTPM: 38.8
Min nTPM: 33.3
Sample A Male 36.5
Sample B Male 38.8
Sample C Female 33.3
Sample D Female 38.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.4
70300995 Antisense, RP_050607_02_H07, Mouse strain C57BL/6J (56 days, male) 1.4
Pallidum
Expression energy: 0.6
70300995 Antisense, RP_050607_02_H07, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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