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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:19.9 nTPM
HPA:19.9 nTPM
GTEx:30.0 nTPM
FANTOM5:164.6 Scaled Tags Per Million
Pig:95.0 nTPM
Mouse:56.8 nTPM
Allen mouse:3.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA066283
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 19.9
Sample id Sample description nTPM
Hippocampus
nTPM: 16.9
1898 Male, age 80, left hemisphere 22.5
1855 Male, age 76, left hemisphere 17.3
2621 Female, age 67, right hemisphere 17.3
1911 Female, age 85, right hemisphere 17.0
2529 Female, age 94, left hemisphere 14.6
2148 Female, age 91, left hemisphere 12.4
Dentate gyrus
nTPM: 18.0
2010 Male, age 76, both hemispheres 23.3
2530 Female, age 94, left hemisphere 20.3
1927 Female, age 91, both hemispheres 19.0
2246 Female, age 85, both hemispheres 17.5
2528 Male, age 74, both hemispheres 17.1
2531 Female, age 67, both hemispheres 10.6
Entorhinal gyrus
nTPM: 14.7
1938 Female, age 85, left hemisphere 20.3
1787 Male, age 76, left hemisphere 16.8
2117 Female, age 91, right hemisphere 14.2
2686 Male, age 75, right hemisphere 13.2
2764 Male, age 80, right hemisphere 13.2
2613 Female, age 94, left hemisphere 10.9
Hippocampus, CA1
nTPM: 18.6
2749 Male, age 80, left hemisphere 26.0
1873 Female, age 85, both hemispheres 23.5
2045 Male, age 76, both hemispheres 17.6
2527 Male, age 74, both hemispheres 15.4
2082 Female, age 91, right hemisphere 10.7
Hippocampus, CA2
nTPM: 17.8
1892 Male, age 76, both hemispheres 24.3
2249 Male, age 74, both hemispheres 21.8
1963 Male, age 80, left hemisphere 18.4
1940 Female, age 85, left hemisphere 15.3
2437 Female, age 94, left hemisphere 15.1
2113 Female, age 91, right hemisphere 12.0
Hippocampus, CA3
nTPM: 15.9
1867 Male, age 76, both hemispheres 21.8
1891 Female, age 85, both hemispheres 19.1
2137 Male, age 80, left hemisphere 16.9
2436 Male, age 74, both hemispheres 15.6
2620 Female, age 94, left hemisphere 12.6
2861 Female, age 67, both hemispheres 9.5
Parahippocampal cortex
nTPM: 16.4
1850 Male, age 80, both hemispheres 20.9
1933 Female, age 85, both hemispheres 20.8
2250 Female, age 67, right hemisphere 18.3
2693 Female, age 94, both hemispheres 17.7
1990 Female, age 91, right hemisphere 15.8
2692 Male, age 74, both hemispheres 15.8
2532 Female, age 72, left hemisphere 15.7
2245 Female, age 91, both hemispheres 14.6
2622 Female, age 67, right hemisphere 12.5
2018 Male, age 76, both hemispheres 12.3
Perirhinal gyrus
nTPM: 19.9
1841 Female, age 85, right hemisphere 24.4
1847 Female, age 91, left hemisphere 20.8
1794 Male, age 80, right hemisphere 19.6
2521 Female, age 94, right hemisphere 17.9
2848 Male, age 76, right hemisphere 16.8
Subiculum
nTPM: 16.3
1977 Female, age 85, both hemispheres 18.8
1901 Male, age 80, both hemispheres 18.1
2042 Male, age 76, both hemispheres 17.7
2438 Female, age 94, left hemisphere 15.7
2619 Male, age 74, both hemispheres 13.9
2729 Female, age 91, right hemisphere 13.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 30.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 30.0
Samples: 197

Max nTPM: 58.5
Min nTPM: 12.1
Std nTPM: 8.3
Median nTPM: 30.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 58.5
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 51.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 51.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 49.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 48.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 48.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 48.1
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 46.1
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 45.3
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 44.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 42.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 164.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 164.6
FF:10169-103B7 60 years, female 228.1
FF:10153-102I9 76 years, female 101.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 95.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 95.0
Samples: 4

Max nTPM: 122.0
Min nTPM: 74.8
Sample A Female 122.0
Sample B Female 94.0
Sample C Male 89.3
Sample D Male 74.8
Entorhinal cortex
nTPM: 89.0
Samples: 4

Max nTPM: 99.8
Min nTPM: 77.5
Sample A Female 89.6
Sample B Female 89.0
Sample C Male 99.8
Sample D Male 77.5
Subiculum
nTPM: 88.8
Samples: 4

Max nTPM: 101.4
Min nTPM: 81.4
Sample A Female 101.4
Sample B Female 83.7
Sample C Male 81.4
Sample D Male 88.8
Ventral hippocampus
nTPM: 83.8
Samples: 4

Max nTPM: 92.2
Min nTPM: 72.2
Sample A Female 92.2
Sample B Female 72.2
Sample C Male 81.6
Sample D Male 89.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 56.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 55.1
Samples: 4

Max nTPM: 59.5
Min nTPM: 50.2
Sample A Male 59.5
Sample B Male 55.0
Sample C Female 55.5
Sample D Female 50.2
Hippocampal formation
nTPM: 56.8
Samples: 4

Max nTPM: 61.1
Min nTPM: 52.3
Sample A Male 61.1
Sample B Male 52.3
Sample C Female 57.2
Sample D Female 56.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.9
227160 Antisense, RP_040604_01_H06, Mouse strain C57BL/6J (56 days, male) 10.2
71724560 Antisense, RP_050927_04_H09, Mouse strain C57BL/6J (56 days, male) 1.3
77414164 Antisense, RP_070205_01_F07, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.