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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:16.1 nTPM
HPA:16.1 nTPM
GTEx:14.8 nTPM
FANTOM5:20.8 Scaled Tags Per Million
Pig:7.1 nTPM
Mouse:12.8 nTPM
Allen mouse:1.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038052Antibody HPA038053
Glial cells Not detectedNot detected
Neuronal cells Not detectedLow



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 16.1
Sample id Sample description nTPM
Hippocampus
nTPM: 15.0
1898 Male, age 80, left hemisphere 17.2
2621 Female, age 67, right hemisphere 16.9
2529 Female, age 94, left hemisphere 15.3
2148 Female, age 91, left hemisphere 14.0
1911 Female, age 85, right hemisphere 13.5
1855 Male, age 76, left hemisphere 13.1
Dentate gyrus
nTPM: 15.0
2530 Female, age 94, left hemisphere 17.0
2010 Male, age 76, both hemispheres 15.7
1927 Female, age 91, both hemispheres 15.6
2528 Male, age 74, both hemispheres 14.8
2531 Female, age 67, both hemispheres 13.8
2246 Female, age 85, both hemispheres 12.9
Entorhinal gyrus
nTPM: 14.2
2117 Female, age 91, right hemisphere 15.4
2613 Female, age 94, left hemisphere 14.8
1938 Female, age 85, left hemisphere 14.5
2764 Male, age 80, right hemisphere 14.5
2686 Male, age 75, right hemisphere 13.3
1787 Male, age 76, left hemisphere 12.6
Hippocampus, CA1
nTPM: 14.5
2527 Male, age 74, both hemispheres 15.6
2749 Male, age 80, left hemisphere 14.9
1873 Female, age 85, both hemispheres 14.2
2082 Female, age 91, right hemisphere 14.0
2045 Male, age 76, both hemispheres 13.8
Hippocampus, CA2
nTPM: 16.1
2249 Male, age 74, both hemispheres 19.4
1892 Male, age 76, both hemispheres 18.8
1963 Male, age 80, left hemisphere 15.3
2437 Female, age 94, left hemisphere 15.1
1940 Female, age 85, left hemisphere 14.4
2113 Female, age 91, right hemisphere 13.8
Hippocampus, CA3
nTPM: 15.4
2436 Male, age 74, both hemispheres 19.6
1867 Male, age 76, both hemispheres 16.5
2620 Female, age 94, left hemisphere 15.3
1891 Female, age 85, both hemispheres 14.7
2137 Male, age 80, left hemisphere 13.3
2861 Female, age 67, both hemispheres 13.2
Parahippocampal cortex
nTPM: 14.4
1850 Male, age 80, both hemispheres 16.4
2532 Female, age 72, left hemisphere 15.1
2018 Male, age 76, both hemispheres 14.9
2622 Female, age 67, right hemisphere 14.5
2250 Female, age 67, right hemisphere 14.3
1933 Female, age 85, both hemispheres 14.0
1990 Female, age 91, right hemisphere 14.0
2245 Female, age 91, both hemispheres 14.0
2692 Male, age 74, both hemispheres 13.8
2693 Female, age 94, both hemispheres 13.2
Perirhinal gyrus
nTPM: 15.0
1841 Female, age 85, right hemisphere 16.8
1794 Male, age 80, right hemisphere 15.5
1847 Female, age 91, left hemisphere 14.8
2848 Male, age 76, right hemisphere 14.5
2521 Female, age 94, right hemisphere 13.5
Subiculum
nTPM: 14.6
2619 Male, age 74, both hemispheres 15.9
1901 Male, age 80, both hemispheres 15.3
1977 Female, age 85, both hemispheres 14.6
2438 Female, age 94, left hemisphere 14.0
2729 Female, age 91, right hemisphere 14.0
2042 Male, age 76, both hemispheres 13.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 14.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 14.8
Samples: 197

Max nTPM: 25.4
Min nTPM: 6.2
Std nTPM: 3.5
Median nTPM: 14.8
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 25.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 25.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 24.6
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 24.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 23.8
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 22.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 22.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 22.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 21.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 21.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 21.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 20.8
FF:10169-103B7 60 years, female 26.1
FF:10153-102I9 76 years, female 15.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 7.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 7.1
Samples: 4

Max nTPM: 8.3
Min nTPM: 5.8
Sample A Female 8.3
Sample B Female 6.6
Sample C Male 7.7
Sample D Male 5.8
Entorhinal cortex
nTPM: 6.0
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.2
Sample A Female 5.9
Sample B Female 7.0
Sample C Male 6.0
Sample D Male 5.2
Subiculum
nTPM: 5.8
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.1
Sample A Female 6.7
Sample B Female 6.0
Sample C Male 5.5
Sample D Male 5.1
Ventral hippocampus
nTPM: 6.9
Samples: 4

Max nTPM: 8.0
Min nTPM: 5.5
Sample A Female 7.2
Sample B Female 5.5
Sample C Male 8.0
Sample D Male 6.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 12.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 12.9
Samples: 4

Max nTPM: 14.3
Min nTPM: 10.9
Sample A Male 14.3
Sample B Male 14.0
Sample C Female 10.9
Sample D Female 12.2
Hippocampal formation
nTPM: 12.8
Samples: 4

Max nTPM: 13.3
Min nTPM: 12.2
Sample A Male 13.1
Sample B Male 12.6
Sample C Female 12.2
Sample D Female 13.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.3
324008 Antisense, RP_040617_01_B01, Mouse strain C57BL/6J (56 days, male) 1.8
71608351 Antisense, RP_050927_01_E07, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.