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CPT1A
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.0 nTPM
HPA:22.0 nTPM
GTEx:14.1 nTPM
FANTOM5:21.9 Scaled Tags Per Million
Pig:29.5 nTPM
Mouse:18.9 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.9
2019 Male, age 18, unknown 26.3
2219 Male, age 76, both hemispheres 17.9
2828 Female, age 72, unknown 17.1
2666 Male, age 74, left hemisphere 16.5
1827 Male, age 72, unknown 15.4
2411 Female, age 72, unknown 14.0
2586 Male, age 75, left hemisphere 13.9
1830 Male, age 51, unknown 12.7
1833 Male, age 53, unknown 12.7
1870 Female, age 42, unknown 12.6
Dorsal raphe nucleus
nTPM: 18.1
1828 Male, age 53, unknown 22.0
2047 Male, age 72, unknown 21.4
2016 Female, age 72, unknown 16.5
2750 Male, age 76, both hemispheres 15.8
2298 Female, age 72, unknown 14.9
Inferior colliculus
nTPM: 15.2
1890 Male, age 53, unknown 17.2
2097 Female, age 72, unknown 17.2
1848 Female, age 42, unknown 16.2
2849 Male, age 72, unknown 10.1
Median raphe nucleus
nTPM: 15.0
2220 Male, age 76, midline 15.0
Pedunculopontine tegmental nucleus
nTPM: 13.6
2338 Male, age 61, both hemispheres 14.9
1921 Female, age 85, both hemispheres 13.7
2334 Male, age 80, both hemispheres 12.3
Periaquaductal grey, anterior
nTPM: 15.8
1947 Male, age 18, unknown 17.4
1795 Male, age 51, unknown 15.8
2502 Female, age 75, unknown 14.2
Periaquaductal grey, dorsal
nTPM: 13.1
2850 Male, age 76, both hemispheres 15.9
2464 Female, age 72, unknown 13.5
1831 Male, age 72, unknown 12.1
1840 Male, age 53, unknown 10.8
Periaquaductal grey, lateral
nTPM: 13.6
2140 Male, age 76, both hemispheres 16.3
2272 Male, age 74, both hemispheres 16.1
2053 Male, age 18, unknown 8.3
Pretectal area
nTPM: 15.6
1817 Female, age 42, unknown 23.0
2007 Male, age 72, unknown 22.1
2667 Female, age 75, unknown 18.9
1944 Female, age 72, unknown 17.3
1816 Male, age 51, unknown 16.5
2273 Male, age 74, both hemispheres 15.3
1815 Male, age 53, unknown 15.1
2224 Female, age 72, unknown 14.0
2316 Male, age 76, right hemisphere 11.4
2825 Male, age 18, unknown 9.6
2407 Male, age 75, both hemispheres 8.2
Red nucleus
nTPM: 17.0
2588 Male, age 74, left hemisphere 20.8
2785 Male, age 18, unknown 20.0
1954 Female, age 42, unknown 19.0
1821 Female, age 72, unknown 18.7
1904 Male, age 53, unknown 18.4
2725 Female, age 75, unknown 17.2
1865 Male, age 51, unknown 16.8
2769 Male, age 72, unknown 16.3
2503 Female, age 72, unknown 15.7
2227 Male, age 72, unknown 15.5
2823 Male, age 76, right hemisphere 15.5
2584 Male, age 75, left hemisphere 10.4
Substantia nigra
nTPM: 22.0
1916 Female, age 42, unknown 32.4
1851 Male, age 51, unknown 25.5
2241 Male, age 72, unknown 24.1
1941 Male, age 53, unknown 23.4
2665 Male, age 74, both hemispheres 22.7
2699 Male, age 18, unknown 22.6
2409 Female, age 72, unknown 21.3
1889 Female, age 72, unknown 21.1
2590 Female, age 75, unknown 15.2
2583 Male, age 75, right hemisphere 11.8
Superior colliculus
nTPM: 13.0
2087 Female, age 72, unknown 17.2
1895 Male, age 76, right hemisphere 16.3
2668 Female, age 75, unknown 15.6
1796 Male, age 53, unknown 15.2
2587 Male, age 74, left hemisphere 12.5
2261 Male, age 18, unknown 12.3
1839 Male, age 51, unknown 12.2
1995 Male, age 72, unknown 10.9
2664 Male, age 75, both hemispheres 9.0
1913 Female, age 42, unknown 8.8
Ventral tegmental area
nTPM: 18.9
2218 Male, age 76, both hemispheres 23.6
1915 Female, age 42, unknown 23.1
2410 Female, age 72, unknown 22.4
1942 Male, age 51, unknown 17.8
2223 Female, age 72, unknown 13.3
2021 Male, age 53, unknown 13.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.1
Samples: 139

Max nTPM: 31.6
Min nTPM: 3.5
Std nTPM: 5.1
Median nTPM: 13.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 31.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 29.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 28.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 27.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 24.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 23.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 23.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 22.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 21.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 21.5
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 21.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.9
FF:10158-103A5 76 years, female 21.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.5
Pig sample Sample description nTPM
Midbrain
nTPM: 21.3
Samples: 4

Max nTPM: 39.1
Min nTPM: 10.8
Sample A Female 10.8
Sample B Female 16.8
Sample C Male 39.1
Sample D Male 18.5
Periaqueductal gray
nTPM: 15.3
Samples: 3

Max nTPM: 18.3
Min nTPM: 12.7
Sample B Female 18.3
Sample C Male 14.8
Sample D Male 12.7
Substantia nigra
nTPM: 19.6
Samples: 4

Max nTPM: 21.7
Min nTPM: 18.5
Sample A Female 21.7
Sample B Female 18.5
Sample C Male 19.3
Sample D Male 19.0
Superior colliculi
nTPM: 29.5
Samples: 4

Max nTPM: 41.3
Min nTPM: 21.2
Sample A Female 23.8
Sample B Female 31.7
Sample C Male 41.3
Sample D Male 21.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.9
Samples: 4

Max nTPM: 19.5
Min nTPM: 18.5
Sample A Male 18.8
Sample B Male 18.5
Sample C Female 19.5
Sample D Female 18.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
1478 Antisense, RP_Baylor_102701, Mouse strain C57BL/6J (56 days, male) 0.8
100142537 Antisense, RP_110421_03_F04, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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