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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.5 nTPM
HPA:27.5 nTPM
GTEx:40.2 nTPM
FANTOM5:10.5 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.4
1870 Female, age 42, unknown 20.4
2666 Male, age 74, left hemisphere 20.2
1833 Male, age 53, unknown 20.1
2586 Male, age 75, left hemisphere 19.1
1830 Male, age 51, unknown 18.4
2828 Female, age 72, unknown 18.3
2411 Female, age 72, unknown 18.0
1827 Male, age 72, unknown 17.4
2219 Male, age 76, both hemispheres 16.9
2019 Male, age 18, unknown 15.3
Dorsal raphe nucleus
nTPM: 25.1
2016 Female, age 72, unknown 27.2
2298 Female, age 72, unknown 27.2
2047 Male, age 72, unknown 27.1
1828 Male, age 53, unknown 25.0
2750 Male, age 76, both hemispheres 18.8
Inferior colliculus
nTPM: 19.7
2849 Male, age 72, unknown 21.9
1890 Male, age 53, unknown 19.7
2097 Female, age 72, unknown 19.2
1848 Female, age 42, unknown 17.9
Median raphe nucleus
nTPM: 23.4
2220 Male, age 76, midline 23.4
Pedunculopontine tegmental nucleus
nTPM: 23.5
2338 Male, age 61, both hemispheres 26.8
2334 Male, age 80, both hemispheres 21.9
1921 Female, age 85, both hemispheres 21.7
Periaquaductal grey, anterior
nTPM: 20.3
1795 Male, age 51, unknown 21.9
1947 Male, age 18, unknown 19.7
2502 Female, age 75, unknown 19.1
Periaquaductal grey, dorsal
nTPM: 27.5
2850 Male, age 76, both hemispheres 35.4
1840 Male, age 53, unknown 29.0
1831 Male, age 72, unknown 25.0
2464 Female, age 72, unknown 20.4
Periaquaductal grey, lateral
nTPM: 25.5
2140 Male, age 76, both hemispheres 28.2
2272 Male, age 74, both hemispheres 24.6
2053 Male, age 18, unknown 23.8
Pretectal area
nTPM: 19.9
2825 Male, age 18, unknown 26.8
2273 Male, age 74, both hemispheres 26.0
2224 Female, age 72, unknown 25.2
2407 Male, age 75, both hemispheres 22.8
2316 Male, age 76, right hemisphere 19.4
2667 Female, age 75, unknown 17.8
1817 Female, age 42, unknown 17.3
1815 Male, age 53, unknown 17.1
1816 Male, age 51, unknown 15.7
1944 Female, age 72, unknown 15.7
2007 Male, age 72, unknown 15.6
Red nucleus
nTPM: 18.3
2584 Male, age 75, left hemisphere 19.5
1821 Female, age 72, unknown 19.4
2769 Male, age 72, unknown 19.4
1904 Male, age 53, unknown 18.8
2227 Male, age 72, unknown 18.8
2725 Female, age 75, unknown 18.6
1954 Female, age 42, unknown 18.1
1865 Male, age 51, unknown 18.0
2823 Male, age 76, right hemisphere 17.9
2503 Female, age 72, unknown 17.8
2785 Male, age 18, unknown 16.5
2588 Male, age 74, left hemisphere 16.2
Substantia nigra
nTPM: 19.5
2699 Male, age 18, unknown 25.2
2590 Female, age 75, unknown 21.4
2665 Male, age 74, both hemispheres 20.8
1851 Male, age 51, unknown 20.7
2583 Male, age 75, right hemisphere 20.3
1916 Female, age 42, unknown 19.3
1889 Female, age 72, unknown 18.3
2241 Male, age 72, unknown 18.1
1941 Male, age 53, unknown 16.3
2409 Female, age 72, unknown 14.9
Superior colliculus
nTPM: 19.6
2664 Male, age 75, both hemispheres 24.9
1995 Male, age 72, unknown 21.9
2587 Male, age 74, left hemisphere 20.2
1796 Male, age 53, unknown 20.0
1839 Male, age 51, unknown 19.5
1913 Female, age 42, unknown 19.4
2668 Female, age 75, unknown 19.1
2087 Female, age 72, unknown 17.0
2261 Male, age 18, unknown 17.0
1895 Male, age 76, right hemisphere 16.4
Ventral tegmental area
nTPM: 22.8
1915 Female, age 42, unknown 24.7
1942 Male, age 51, unknown 24.1
2021 Male, age 53, unknown 23.8
2223 Female, age 72, unknown 23.4
2218 Male, age 76, both hemispheres 22.0
2410 Female, age 72, unknown 18.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.2
Samples: 139

Max nTPM: 381.0
Min nTPM: 3.4
Std nTPM: 54.1
Median nTPM: 25.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 381.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 299.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 283.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 229.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 204.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 201.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 168.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 125.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 108.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 105.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 86.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.5
FF:10158-103A5 76 years, female 10.5

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The Human Protein Atlas

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