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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:40.5 nTPM
HPA:40.5 nTPM
GTEx:39.6 nTPM
FANTOM5:92.8 Scaled Tags Per Million
Pig:48.6 nTPM
Mouse:63.2 nTPM
Allen mouse:17.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038568
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 40.5
Sample id Sample description nTPM
Hippocampus
nTPM: 27.9
1855 Male, age 76, left hemisphere 34.1
2621 Female, age 67, right hemisphere 33.8
2148 Female, age 91, left hemisphere 33.3
1898 Male, age 80, left hemisphere 31.2
1911 Female, age 85, right hemisphere 23.6
2529 Female, age 94, left hemisphere 11.6
Dentate gyrus
nTPM: 33.8
1927 Female, age 91, both hemispheres 46.9
2531 Female, age 67, both hemispheres 38.9
2010 Male, age 76, both hemispheres 33.5
2530 Female, age 94, left hemisphere 31.5
2246 Female, age 85, both hemispheres 27.2
2528 Male, age 74, both hemispheres 24.6
Entorhinal gyrus
nTPM: 26.8
2613 Female, age 94, left hemisphere 41.7
2764 Male, age 80, right hemisphere 34.6
1938 Female, age 85, left hemisphere 26.9
1787 Male, age 76, left hemisphere 25.2
2686 Male, age 75, right hemisphere 21.2
2117 Female, age 91, right hemisphere 11.0
Hippocampus, CA1
nTPM: 40.5
2749 Male, age 80, left hemisphere 79.1
1873 Female, age 85, both hemispheres 39.3
2045 Male, age 76, both hemispheres 37.9
2527 Male, age 74, both hemispheres 25.8
2082 Female, age 91, right hemisphere 20.2
Hippocampus, CA2
nTPM: 29.1
1963 Male, age 80, left hemisphere 46.2
1892 Male, age 76, both hemispheres 45.8
2437 Female, age 94, left hemisphere 25.5
1940 Female, age 85, left hemisphere 21.0
2113 Female, age 91, right hemisphere 19.1
2249 Male, age 74, both hemispheres 16.9
Hippocampus, CA3
nTPM: 37.1
2137 Male, age 80, left hemisphere 67.9
2620 Female, age 94, left hemisphere 45.2
2861 Female, age 67, both hemispheres 37.7
1867 Male, age 76, both hemispheres 28.1
1891 Female, age 85, both hemispheres 22.0
2436 Male, age 74, both hemispheres 21.4
Parahippocampal cortex
nTPM: 27.1
2693 Female, age 94, both hemispheres 35.1
1850 Male, age 80, both hemispheres 34.5
2245 Female, age 91, both hemispheres 30.1
1933 Female, age 85, both hemispheres 29.0
2622 Female, age 67, right hemisphere 28.4
2532 Female, age 72, left hemisphere 27.2
1990 Female, age 91, right hemisphere 26.5
2250 Female, age 67, right hemisphere 22.6
2018 Male, age 76, both hemispheres 21.3
2692 Male, age 74, both hemispheres 16.4
Perirhinal gyrus
nTPM: 36.3
1794 Male, age 80, right hemisphere 38.8
1847 Female, age 91, left hemisphere 38.8
2521 Female, age 94, right hemisphere 36.3
1841 Female, age 85, right hemisphere 34.9
2848 Male, age 76, right hemisphere 32.5
Subiculum
nTPM: 19.8
1901 Male, age 80, both hemispheres 30.5
1977 Female, age 85, both hemispheres 25.3
2729 Female, age 91, right hemisphere 21.8
2619 Male, age 74, both hemispheres 16.4
2042 Male, age 76, both hemispheres 15.3
2438 Female, age 94, left hemisphere 9.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 39.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 39.6
Samples: 197

Max nTPM: 106.7
Min nTPM: 9.2
Std nTPM: 18.8
Median nTPM: 35.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 106.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 97.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 90.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 82.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 81.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 79.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 77.2
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 77.0
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 76.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 75.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 73.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 92.8
FF:10169-103B7 60 years, female 116.1
FF:10153-102I9 76 years, female 69.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 48.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 41.6
Samples: 4

Max nTPM: 49.6
Min nTPM: 32.6
Sample A Female 49.4
Sample B Female 49.6
Sample C Male 32.6
Sample D Male 34.7
Entorhinal cortex
nTPM: 48.7
Samples: 4

Max nTPM: 53.4
Min nTPM: 45.9
Sample A Female 53.4
Sample B Female 45.9
Sample C Male 48.5
Sample D Male 46.8
Subiculum
nTPM: 43.4
Samples: 4

Max nTPM: 54.3
Min nTPM: 35.7
Sample A Female 54.3
Sample B Female 38.4
Sample C Male 45.2
Sample D Male 35.7
Ventral hippocampus
nTPM: 46.8
Samples: 4

Max nTPM: 58.3
Min nTPM: 34.3
Sample A Female 49.5
Sample B Female 34.3
Sample C Male 58.3
Sample D Male 44.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 63.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 63.2
Samples: 4

Max nTPM: 72.8
Min nTPM: 58.5
Sample A Male 58.5
Sample B Male 62.0
Sample C Female 59.5
Sample D Female 72.8
Hippocampal formation
nTPM: 61.8
Samples: 4

Max nTPM: 72.0
Min nTPM: 50.8
Sample A Male 50.8
Sample B Male 68.0
Sample C Female 72.0
Sample D Female 56.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 17.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 17.4
69236700 Antisense, RP_050329_04_C01, Mouse strain C57BL/6J (56 days, male) 17.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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