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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:5.9 nTPM
HPA:5.9 nTPM
GTEx:3.3 nTPM
FANTOM5:0.1 Scaled Tags Per Million
Pig:11.4 nTPM
Mouse:9.2 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA001923Antibody HPA003908
Glial cells MediumLow
Neuronal cells LowLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.7
2481 Female, age 94, left hemisphere 8.7
2289 Male, age 61, right hemisphere 6.1
1857 Female, age 85, left hemisphere 6.0
2288 Male, age 75, left hemisphere 5.4
2290 Female, age 72, unknown 5.1
1854 Male, age 80, left hemisphere 3.8
1781 Male, age 74, unknown 1.8
2846 Female, age 79, unknown 1.1
Claustrum
nTPM: 0.9
1956 Male, age 74, unknown 1.8
2196 Female, age 79, unknown 1.8
2392 Female, age 94, both hemispheres 1.0
2292 Female, age 85, both hemispheres 0.9
2645 Female, age 72, unknown 0.8
2568 Male, age 61, both hemispheres 0.7
2491 Male, age 75, both hemispheres 0.6
2198 Male, age 80, both hemispheres 0.5
2284 Female, age 91, both hemispheres 0.2
Globus pallidus, externus
nTPM: 5.1
1996 Male, age 80, right hemisphere 7.2
2772 Female, age 79, unknown 6.9
2646 Male, age 61, right hemisphere 5.9
2567 Female, age 72, unknown 4.5
2395 Male, age 75, both hemispheres 1.0
Globus pallidus, internus
nTPM: 4.1
1818 Male, age 74, unknown 5.3
2483 Female, age 94, right hemisphere 4.9
2037 Male, age 80, right hemisphere 4.8
2566 Female, age 72, unknown 4.6
2111 Female, age 85, right hemisphere 3.4
2778 Female, age 91, both hemispheres 3.2
2287 Male, age 75, right hemisphere 2.5
Nucleus accumbens
nTPM: 4.3
2698 Female, age 72, unknown 5.7
2732 Male, age 80, right hemisphere 5.5
2391 Female, age 94, left hemisphere 5.0
1806 Female, age 85, left hemisphere 4.9
2286 Male, age 75, left hemisphere 4.8
1856 Female, age 91, right hemisphere 3.4
2824 Male, age 61, right hemisphere 2.8
1783 Male, age 74, unknown 1.9
Nucleus basalis of Meynert
nTPM: 3.5
2569 Male, age 61, both hemispheres 5.6
2393 Male, age 80, right hemisphere 3.6
2484 Female, age 94, left hemisphere 3.5
2821 Male, age 75, both hemispheres 1.2
Nucleus of the diagonal band
nTPM: 4.7
2195 Female, age 85, both hemispheres 7.0
1812 Female, age 91, both hemispheres 5.6
1979 Male, age 74, unknown 5.1
2775 Male, age 80, right hemisphere 4.2
2029 Male, age 61, right hemisphere 1.7
Olfactory tubercle
nTPM: 3.8
1846 Male, age 80, right hemisphere 5.0
2487 Female, age 94, left hemisphere 4.5
2856 Male, age 75, right hemisphere 4.4
1998 Female, age 91, both hemispheres 1.5
Putamen
nTPM: 3.1
2482 Female, age 94, left hemisphere 6.1
1838 Male, age 80, right hemisphere 4.1
1829 Male, age 74, unknown 3.8
1937 Female, age 91, right hemisphere 2.6
2489 Female, age 72, unknown 2.4
2647 Male, age 75, left hemisphere 2.0
2466 Female, age 79, unknown 0.7
Septal nuclei
nTPM: 5.9
2199 Male, age 80, right hemisphere 8.5
2059 Female, age 85, both hemispheres 7.5
2629 Female, age 94, right hemisphere 7.1
2009 Female, age 91, both hemispheres 5.7
2394 Male, age 61, left hemisphere 5.4
1960 Male, age 74, unknown 4.0
2031 Female, age 72, unknown 3.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.3
Samples: 246

Max nTPM: 6.0
Min nTPM: 0.8
Std nTPM: 0.9
Median nTPM: 3.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 6.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 5.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 5.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 5.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 5.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 5.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 5.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 5.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 5.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 5.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 5.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.8
Samples: 246

Max nTPM: 5.9
Min nTPM: 0.7
Std nTPM: 0.8
Median nTPM: 2.7
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 5.9
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 5.8
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 5.3
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 5.2
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 5.2
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 5.1
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 5.1
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 4.9
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 4.7
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 4.7
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 4.6
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Brain - Putamen (basal ganglia)
Average nTPM: 2.7
Samples: 205

Max nTPM: 5.9
Min nTPM: 0.7
Std nTPM: 0.8
Median nTPM: 2.6
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 5.9
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 5.2
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 5.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 4.8
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 4.7
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 4.5
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 4.5
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 4.4
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 4.3
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 4.2
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 4.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.1
FF:10164-103B2 76 years, female 0.1
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.4
Pig sample Sample description nTPM
Caudate
nTPM: 10.8
Samples: 4

Max nTPM: 12.3
Min nTPM: 9.9
Sample A Female 12.3
Sample B Female 10.3
Sample C Male 10.8
Sample D Male 9.9
Putamen
nTPM: 10.5
Samples: 4

Max nTPM: 16.4
Min nTPM: 7.2
Sample A Female 16.4
Sample B Female 7.2
Sample C Male 10.7
Sample D Male 7.8
Septum
nTPM: 11.5
Samples: 4

Max nTPM: 14.1
Min nTPM: 9.8
Sample A Female 11.2
Sample B Female 9.8
Sample C Male 14.1
Sample D Male 10.7
Ventral pallidum
nTPM: 10.4
Samples: 4

Max nTPM: 14.7
Min nTPM: 8.1
Sample A Female 9.5
Sample B Female 8.1
Sample C Male 14.7
Sample D Male 9.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 9.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 7.5
Samples: 4

Max nTPM: 8.0
Min nTPM: 6.5
Sample A Male 8.0
Sample B Male 7.3
Sample C Female 6.5
Sample D Female 8.0
Septum
nTPM: 9.2
Samples: 4

Max nTPM: 10.2
Min nTPM: 7.7
Sample A Male 10.2
Sample B Male 10.0
Sample C Female 8.9
Sample D Female 7.7
Ventral forebrain
nTPM: 8.2
Samples: 4

Max nTPM: 11.8
Min nTPM: 6.1
Sample A Male 6.1
Sample B Male 11.8
Sample C Female 6.7
Sample D Female 8.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
71488807 Antisense, RP_050825_03_A06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
71488807 Antisense, RP_050825_03_A06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.