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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:41.3 nTPM
HPA:41.3 nTPM
GTEx:33.6 nTPM
FANTOM5:71.0 Scaled Tags Per Million
Pig:61.5 nTPM
Mouse:53.5 nTPM
Allen mouse:7.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041737
Glial cells Not detected
Neuronal cells High


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 41.3
Sample id Sample description nTPM
Hippocampus
nTPM: 34.5
1898 Male, age 80, left hemisphere 39.2
1855 Male, age 76, left hemisphere 34.2
1911 Female, age 85, right hemisphere 34.2
2621 Female, age 67, right hemisphere 33.9
2148 Female, age 91, left hemisphere 32.7
2529 Female, age 94, left hemisphere 32.6
Dentate gyrus
nTPM: 36.6
2010 Male, age 76, both hemispheres 45.2
1927 Female, age 91, both hemispheres 40.7
2530 Female, age 94, left hemisphere 38.2
2531 Female, age 67, both hemispheres 33.0
2246 Female, age 85, both hemispheres 32.8
2528 Male, age 74, both hemispheres 30.0
Entorhinal gyrus
nTPM: 34.1
1938 Female, age 85, left hemisphere 37.3
2613 Female, age 94, left hemisphere 36.1
2117 Female, age 91, right hemisphere 35.6
2686 Male, age 75, right hemisphere 32.6
1787 Male, age 76, left hemisphere 32.1
2764 Male, age 80, right hemisphere 31.0
Hippocampus, CA1
nTPM: 41.3
2749 Male, age 80, left hemisphere 65.5
2045 Male, age 76, both hemispheres 40.7
1873 Female, age 85, both hemispheres 37.7
2082 Female, age 91, right hemisphere 32.2
2527 Male, age 74, both hemispheres 30.5
Hippocampus, CA2
nTPM: 35.0
1963 Male, age 80, left hemisphere 45.4
1892 Male, age 76, both hemispheres 39.2
2437 Female, age 94, left hemisphere 32.5
2249 Male, age 74, both hemispheres 31.6
2113 Female, age 91, right hemisphere 30.5
1940 Female, age 85, left hemisphere 30.4
Hippocampus, CA3
nTPM: 36.6
2137 Male, age 80, left hemisphere 56.3
1867 Male, age 76, both hemispheres 46.1
1891 Female, age 85, both hemispheres 35.7
2861 Female, age 67, both hemispheres 30.2
2620 Female, age 94, left hemisphere 27.6
2436 Male, age 74, both hemispheres 23.4
Parahippocampal cortex
nTPM: 31.5
2018 Male, age 76, both hemispheres 36.6
2692 Male, age 74, both hemispheres 33.2
1990 Female, age 91, right hemisphere 33.0
1850 Male, age 80, both hemispheres 32.8
2245 Female, age 91, both hemispheres 32.3
2532 Female, age 72, left hemisphere 31.3
2250 Female, age 67, right hemisphere 31.1
1933 Female, age 85, both hemispheres 30.2
2693 Female, age 94, both hemispheres 28.9
2622 Female, age 67, right hemisphere 26.1
Perirhinal gyrus
nTPM: 29.2
1847 Female, age 91, left hemisphere 34.5
2848 Male, age 76, right hemisphere 28.6
1841 Female, age 85, right hemisphere 28.3
1794 Male, age 80, right hemisphere 28.1
2521 Female, age 94, right hemisphere 26.2
Subiculum
nTPM: 36.2
2042 Male, age 76, both hemispheres 48.2
1901 Male, age 80, both hemispheres 43.0
2438 Female, age 94, left hemisphere 32.9
1977 Female, age 85, both hemispheres 32.8
2729 Female, age 91, right hemisphere 30.8
2619 Male, age 74, both hemispheres 29.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 33.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 33.6
Samples: 197

Max nTPM: 72.7
Min nTPM: 19.0
Std nTPM: 7.5
Median nTPM: 32.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 72.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 56.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 51.6
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 50.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 49.8
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 49.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 47.6
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 47.4
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 47.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 47.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 46.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 71.0
FF:10153-102I9 76 years, female 73.0
FF:10169-103B7 60 years, female 69.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 61.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 61.5
Samples: 4

Max nTPM: 73.2
Min nTPM: 50.7
Sample A Female 73.2
Sample B Female 67.2
Sample C Male 54.8
Sample D Male 50.7
Entorhinal cortex
nTPM: 43.6
Samples: 4

Max nTPM: 46.6
Min nTPM: 39.7
Sample A Female 46.6
Sample B Female 44.2
Sample C Male 43.8
Sample D Male 39.7
Subiculum
nTPM: 45.2
Samples: 4

Max nTPM: 55.4
Min nTPM: 39.0
Sample A Female 55.4
Sample B Female 41.3
Sample C Male 45.0
Sample D Male 39.0
Ventral hippocampus
nTPM: 50.8
Samples: 4

Max nTPM: 70.3
Min nTPM: 38.1
Sample A Female 45.6
Sample B Female 38.1
Sample C Male 49.0
Sample D Male 70.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 53.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 44.1
Samples: 4

Max nTPM: 51.4
Min nTPM: 40.3
Sample A Male 41.8
Sample B Male 40.3
Sample C Female 42.7
Sample D Female 51.4
Hippocampal formation
nTPM: 53.6
Samples: 4

Max nTPM: 64.9
Min nTPM: 46.5
Sample A Male 48.0
Sample B Male 54.9
Sample C Female 64.9
Sample D Female 46.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.7
68637748 Antisense, RP_050126_01_E08, Mouse strain C57BL/6J (56 days, male) 8.7
75651191 Antisense, RP_060518_01_C08, Mouse strain C57BL/6J (56 days, male) 6.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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