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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.1 nTPM
HPA:5.1 nTPM
GTEx:3.1 nTPM
FANTOM5:4.5 Scaled Tags Per Million
Pig:5.2 nTPM
Mouse:0.8 nTPM
Allen mouse:1.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.6
2290 Female, age 72, unknown 4.7
1854 Male, age 80, left hemisphere 4.6
2289 Male, age 61, right hemisphere 4.0
1857 Female, age 85, left hemisphere 3.7
2288 Male, age 75, left hemisphere 3.4
1781 Male, age 74, unknown 2.9
2846 Female, age 79, unknown 2.7
2481 Female, age 94, left hemisphere 2.5
Claustrum
nTPM: 4.1
2491 Male, age 75, both hemispheres 4.8
2284 Female, age 91, both hemispheres 4.6
2568 Male, age 61, both hemispheres 4.5
2645 Female, age 72, unknown 4.4
2392 Female, age 94, both hemispheres 4.3
1956 Male, age 74, unknown 4.2
2198 Male, age 80, both hemispheres 3.9
2196 Female, age 79, unknown 3.4
2292 Female, age 85, both hemispheres 3.2
Globus pallidus, externus
nTPM: 4.0
2646 Male, age 61, right hemisphere 5.3
1996 Male, age 80, right hemisphere 4.4
2567 Female, age 72, unknown 4.4
2772 Female, age 79, unknown 3.6
2395 Male, age 75, both hemispheres 2.1
Globus pallidus, internus
nTPM: 4.2
1818 Male, age 74, unknown 5.4
2111 Female, age 85, right hemisphere 5.0
2483 Female, age 94, right hemisphere 4.3
2778 Female, age 91, both hemispheres 4.1
2037 Male, age 80, right hemisphere 3.8
2566 Female, age 72, unknown 3.8
2287 Male, age 75, right hemisphere 3.1
Nucleus accumbens
nTPM: 4.0
2732 Male, age 80, right hemisphere 5.5
1856 Female, age 91, right hemisphere 4.5
2698 Female, age 72, unknown 4.2
1806 Female, age 85, left hemisphere 4.1
2824 Male, age 61, right hemisphere 3.9
1783 Male, age 74, unknown 3.7
2286 Male, age 75, left hemisphere 3.2
2391 Female, age 94, left hemisphere 3.0
Nucleus basalis of Meynert
nTPM: 4.3
2569 Male, age 61, both hemispheres 5.9
2393 Male, age 80, right hemisphere 4.6
2484 Female, age 94, left hemisphere 4.3
2821 Male, age 75, both hemispheres 2.4
Nucleus of the diagonal band
nTPM: 4.8
1979 Male, age 74, unknown 7.3
2775 Male, age 80, right hemisphere 4.8
2195 Female, age 85, both hemispheres 4.3
1812 Female, age 91, both hemispheres 3.8
2029 Male, age 61, right hemisphere 3.8
Olfactory tubercle
nTPM: 4.7
2856 Male, age 75, right hemisphere 5.5
2487 Female, age 94, left hemisphere 4.6
1998 Female, age 91, both hemispheres 4.5
1846 Male, age 80, right hemisphere 4.3
Putamen
nTPM: 3.9
1937 Female, age 91, right hemisphere 4.7
1838 Male, age 80, right hemisphere 4.6
2489 Female, age 72, unknown 4.3
2647 Male, age 75, left hemisphere 4.3
1829 Male, age 74, unknown 3.9
2466 Female, age 79, unknown 3.2
2482 Female, age 94, left hemisphere 2.4
Septal nuclei
nTPM: 5.1
2199 Male, age 80, right hemisphere 6.9
2394 Male, age 61, left hemisphere 6.1
2059 Female, age 85, both hemispheres 5.9
2009 Female, age 91, both hemispheres 4.7
2629 Female, age 94, right hemisphere 4.2
1960 Male, age 74, unknown 4.1
2031 Female, age 72, unknown 4.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.0
Samples: 246

Max nTPM: 9.6
Min nTPM: 0.5
Std nTPM: 1.5
Median nTPM: 2.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 9.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 8.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 7.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 7.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 7.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 7.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 7.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 6.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 6.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 6.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 6.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.0
Samples: 246

Max nTPM: 8.9
Min nTPM: 0.3
Std nTPM: 1.4
Median nTPM: 2.7
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 8.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 8.6
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 8.3
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 7.5
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 7.3
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 6.7
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 6.5
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 6.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 6.4
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 6.3
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 6.2
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Brain - Putamen (basal ganglia)
Average nTPM: 3.1
Samples: 205

Max nTPM: 10.8
Min nTPM: 0.6
Std nTPM: 1.8
Median nTPM: 2.5
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 10.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 9.1
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 9.1
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 8.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 8.8
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 8.8
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 8.5
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 7.6
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 7.4
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 7.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 6.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.3
FF:10164-103B2 76 years, female 2.3
Globus pallidus
Scaled Tags Per Million: 4.5
FF:10175-103C4 60 years, female 6.3
FF:10161-103A8 76 years, female 2.7
Nucleus accumbens
Scaled Tags Per Million: 4.2
FF:10037-101F1 23-56 years, mixed 4.2
Putamen
Scaled Tags Per Million: 4.0
FF:10176-103C5 60 years, female 4.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.2
Pig sample Sample description nTPM
Caudate
nTPM: 4.8
Samples: 4

Max nTPM: 5.0
Min nTPM: 4.4
Sample A Female 4.4
Sample B Female 5.0
Sample C Male 5.0
Sample D Male 4.8
Putamen
nTPM: 3.8
Samples: 4

Max nTPM: 4.4
Min nTPM: 3.2
Sample A Female 3.8
Sample B Female 4.4
Sample C Male 3.2
Sample D Male 3.7
Septum
nTPM: 5.2
Samples: 4

Max nTPM: 7.2
Min nTPM: 3.9
Sample A Female 3.9
Sample B Female 5.0
Sample C Male 4.7
Sample D Male 7.2
Ventral pallidum
nTPM: 4.4
Samples: 4

Max nTPM: 4.6
Min nTPM: 4.1
Sample A Female 4.5
Sample B Female 4.6
Sample C Male 4.1
Sample D Male 4.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.3
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.2
Sample A Male 0.3
Sample B Male 0.2
Sample C Female 0.2
Sample D Female 0.3
Septum
nTPM: 0.5
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.3
Sample A Male 0.6
Sample B Male 0.5
Sample C Female 0.4
Sample D Female 0.3
Ventral forebrain
nTPM: 0.8
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.5
Sample A Male 0.5
Sample B Male 0.9
Sample C Female 1.0
Sample D Female 0.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.7
70523846 Antisense, RP_050310_02_A01, Mouse strain C57BL/6J (56 days, male) 1.7
70436731 Antisense, RP_050310_02_A01, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 1.6
70523846 Antisense, RP_050310_02_A01, Mouse strain C57BL/6J (56 days, male) 1.6
70436731 Antisense, RP_050310_02_A01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.