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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.7 nTPM
HPA:36.7 nTPM
GTEx:27.1 nTPM
FANTOM5:91.0 Scaled Tags Per Million
Mouse:46.8 nTPM
Allen mouse:2.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.2
1857 Female, age 85, left hemisphere 37.7
2481 Female, age 94, left hemisphere 36.3
2290 Female, age 72, unknown 35.9
1854 Male, age 80, left hemisphere 35.5
2846 Female, age 79, unknown 33.0
2289 Male, age 61, right hemisphere 32.6
2288 Male, age 75, left hemisphere 31.5
1781 Male, age 74, unknown 31.1
Claustrum
nTPM: 30.9
2196 Female, age 79, unknown 32.7
2292 Female, age 85, both hemispheres 31.5
2491 Male, age 75, both hemispheres 31.4
2198 Male, age 80, both hemispheres 30.9
2392 Female, age 94, both hemispheres 30.9
1956 Male, age 74, unknown 30.8
2645 Female, age 72, unknown 30.6
2568 Male, age 61, both hemispheres 29.9
2284 Female, age 91, both hemispheres 29.0
Globus pallidus, externus
nTPM: 36.7
2646 Male, age 61, right hemisphere 38.5
2567 Female, age 72, unknown 36.9
2395 Male, age 75, both hemispheres 36.5
1996 Male, age 80, right hemisphere 36.2
2772 Female, age 79, unknown 35.5
Globus pallidus, internus
nTPM: 34.7
2483 Female, age 94, right hemisphere 40.2
2287 Male, age 75, right hemisphere 34.7
2566 Female, age 72, unknown 34.3
2037 Male, age 80, right hemisphere 34.2
2111 Female, age 85, right hemisphere 33.8
1818 Male, age 74, unknown 33.4
2778 Female, age 91, both hemispheres 32.2
Nucleus accumbens
nTPM: 34.7
1806 Female, age 85, left hemisphere 36.7
2824 Male, age 61, right hemisphere 36.6
1783 Male, age 74, unknown 35.8
2698 Female, age 72, unknown 34.7
1856 Female, age 91, right hemisphere 34.1
2732 Male, age 80, right hemisphere 34.0
2391 Female, age 94, left hemisphere 33.1
2286 Male, age 75, left hemisphere 32.8
Nucleus basalis of Meynert
nTPM: 35.1
2569 Male, age 61, both hemispheres 40.1
2393 Male, age 80, right hemisphere 34.3
2484 Female, age 94, left hemisphere 34.1
2821 Male, age 75, both hemispheres 31.9
Nucleus of the diagonal band
nTPM: 33.8
2195 Female, age 85, both hemispheres 35.7
1979 Male, age 74, unknown 35.4
2775 Male, age 80, right hemisphere 34.3
1812 Female, age 91, both hemispheres 33.4
2029 Male, age 61, right hemisphere 30.4
Olfactory tubercle
nTPM: 32.1
1846 Male, age 80, right hemisphere 36.1
2487 Female, age 94, left hemisphere 31.4
1998 Female, age 91, both hemispheres 31.2
2856 Male, age 75, right hemisphere 29.7
Putamen
nTPM: 34.0
2482 Female, age 94, left hemisphere 35.7
2489 Female, age 72, unknown 34.8
2647 Male, age 75, left hemisphere 34.5
1838 Male, age 80, right hemisphere 33.8
1937 Female, age 91, right hemisphere 33.2
1829 Male, age 74, unknown 33.1
2466 Female, age 79, unknown 32.9
Septal nuclei
nTPM: 33.4
2199 Male, age 80, right hemisphere 35.9
2059 Female, age 85, both hemispheres 35.2
1960 Male, age 74, unknown 34.6
2394 Male, age 61, left hemisphere 33.1
2031 Female, age 72, unknown 32.5
2009 Female, age 91, both hemispheres 31.8
2629 Female, age 94, right hemisphere 30.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 27.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.0
Samples: 246

Max nTPM: 44.8
Min nTPM: 16.7
Std nTPM: 4.5
Median nTPM: 25.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 44.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 43.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 43.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 40.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 39.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 38.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 38.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 37.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 37.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 36.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 36.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.1
Samples: 246

Max nTPM: 44.1
Min nTPM: 18.5
Std nTPM: 4.1
Median nTPM: 26.6
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 44.1
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 43.5
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 37.8
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 36.9
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 36.6
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 36.5
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 36.4
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 35.9
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 35.5
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 34.7
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 34.6
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Brain - Putamen (basal ganglia)
Average nTPM: 24.3
Samples: 205

Max nTPM: 43.6
Min nTPM: 15.9
Std nTPM: 4.1
Median nTPM: 23.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 43.6
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 38.1
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 38.1
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 36.7
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 36.5
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 35.0
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 35.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 32.6
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 32.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 31.5
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 31.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 91.0
FF:10164-103B2 76 years, female 91.0
Globus pallidus
Scaled Tags Per Million: 66.8
FF:10161-103A8 76 years, female 91.7
FF:10175-103C4 60 years, female 41.8
Nucleus accumbens
Scaled Tags Per Million: 84.5
FF:10037-101F1 23-56 years, mixed 84.5
Putamen
Scaled Tags Per Million: 87.7
FF:10176-103C5 60 years, female 87.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 46.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 44.6
Samples: 4

Max nTPM: 48.1
Min nTPM: 41.9
Sample A Male 42.2
Sample B Male 41.9
Sample C Female 46.0
Sample D Female 48.1
Septum
nTPM: 46.8
Samples: 4

Max nTPM: 51.7
Min nTPM: 41.9
Sample A Male 46.8
Sample B Male 41.9
Sample C Female 46.8
Sample D Female 51.7
Ventral forebrain
nTPM: 41.7
Samples: 4

Max nTPM: 45.0
Min nTPM: 37.6
Sample A Male 37.6
Sample B Male 45.0
Sample C Female 40.5
Sample D Female 43.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.7
73732149 Antisense, RP_051121_04_A07, Mouse strain C57BL/6J (56 days, male) 4.4
68151390 Antisense, RP_041116_01_B01, Mouse strain C57BL/6J (56 days, male) 1.4
70474929 Antisense, RP_050623_01_D07, Mouse strain C57BL/6J (56 days, male) 1.0
73930854 Antisense, RP_051214_04_D07, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 2.2
73732149 Antisense, RP_051121_04_A07, Mouse strain C57BL/6J (56 days, male) 5.2
68151390 Antisense, RP_041116_01_B01, Mouse strain C57BL/6J (56 days, male) 2.6
70474929 Antisense, RP_050623_01_D07, Mouse strain C57BL/6J (56 days, male) 0.9
73930854 Antisense, RP_051214_04_D07, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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