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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.4 nTPM
HPA:39.4 nTPM
GTEx:23.5 nTPM
FANTOM5:74.9 Scaled Tags Per Million
Mouse:47.0 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.7
2586 Male, age 75, left hemisphere 44.0
2019 Male, age 18, unknown 37.9
1833 Male, age 53, unknown 37.6
2411 Female, age 72, unknown 36.8
2828 Female, age 72, unknown 36.3
1830 Male, age 51, unknown 36.0
2666 Male, age 74, left hemisphere 35.8
1870 Female, age 42, unknown 35.6
2219 Male, age 76, both hemispheres 33.8
1827 Male, age 72, unknown 33.2
Dorsal raphe nucleus
nTPM: 37.5
2298 Female, age 72, unknown 39.1
1828 Male, age 53, unknown 38.3
2047 Male, age 72, unknown 37.3
2016 Female, age 72, unknown 36.5
2750 Male, age 76, both hemispheres 36.2
Inferior colliculus
nTPM: 35.4
1890 Male, age 53, unknown 37.1
1848 Female, age 42, unknown 35.2
2849 Male, age 72, unknown 35.1
2097 Female, age 72, unknown 34.2
Median raphe nucleus
nTPM: 38.9
2220 Male, age 76, midline 38.9
Pedunculopontine tegmental nucleus
nTPM: 34.3
2334 Male, age 80, both hemispheres 36.0
1921 Female, age 85, both hemispheres 33.5
2338 Male, age 61, both hemispheres 33.3
Periaquaductal grey, anterior
nTPM: 36.6
1947 Male, age 18, unknown 38.0
1795 Male, age 51, unknown 35.9
2502 Female, age 75, unknown 35.9
Periaquaductal grey, dorsal
nTPM: 36.9
1840 Male, age 53, unknown 39.0
2850 Male, age 76, both hemispheres 38.3
2464 Female, age 72, unknown 35.5
1831 Male, age 72, unknown 34.6
Periaquaductal grey, lateral
nTPM: 34.5
2140 Male, age 76, both hemispheres 37.1
2053 Male, age 18, unknown 33.3
2272 Male, age 74, both hemispheres 33.1
Pretectal area
nTPM: 34.5
2667 Female, age 75, unknown 37.5
2825 Male, age 18, unknown 37.0
2224 Female, age 72, unknown 35.8
2407 Male, age 75, both hemispheres 35.4
1816 Male, age 51, unknown 35.3
2273 Male, age 74, both hemispheres 34.4
1815 Male, age 53, unknown 33.9
1817 Female, age 42, unknown 33.8
1944 Female, age 72, unknown 33.1
2007 Male, age 72, unknown 32.1
2316 Male, age 76, right hemisphere 31.6
Red nucleus
nTPM: 37.0
2584 Male, age 75, left hemisphere 40.6
1954 Female, age 42, unknown 40.3
1904 Male, age 53, unknown 38.0
2588 Male, age 74, left hemisphere 38.0
1821 Female, age 72, unknown 37.3
2769 Male, age 72, unknown 36.9
2227 Male, age 72, unknown 36.8
2725 Female, age 75, unknown 36.8
2785 Male, age 18, unknown 35.8
2503 Female, age 72, unknown 35.6
1865 Male, age 51, unknown 35.4
2823 Male, age 76, right hemisphere 32.8
Substantia nigra
nTPM: 39.4
2241 Male, age 72, unknown 49.2
2583 Male, age 75, right hemisphere 41.8
1851 Male, age 51, unknown 40.9
2665 Male, age 74, both hemispheres 40.7
1916 Female, age 42, unknown 40.3
2409 Female, age 72, unknown 39.8
2699 Male, age 18, unknown 37.3
2590 Female, age 75, unknown 35.6
1941 Male, age 53, unknown 34.3
1889 Female, age 72, unknown 33.9
Superior colliculus
nTPM: 34.1
2664 Male, age 75, both hemispheres 37.7
1995 Male, age 72, unknown 35.2
2668 Female, age 75, unknown 35.1
1839 Male, age 51, unknown 34.4
1913 Female, age 42, unknown 33.9
2087 Female, age 72, unknown 33.6
1796 Male, age 53, unknown 33.3
2261 Male, age 18, unknown 33.0
2587 Male, age 74, left hemisphere 32.9
1895 Male, age 76, right hemisphere 32.0
Ventral tegmental area
nTPM: 38.0
1915 Female, age 42, unknown 39.8
2410 Female, age 72, unknown 38.8
2223 Female, age 72, unknown 38.3
1942 Male, age 51, unknown 38.0
2021 Male, age 53, unknown 37.6
2218 Male, age 76, both hemispheres 35.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.5
Samples: 139

Max nTPM: 38.8
Min nTPM: 13.6
Std nTPM: 4.7
Median nTPM: 22.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 38.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 38.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 37.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 35.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 35.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 34.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 33.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 33.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 31.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 31.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 30.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 74.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.9
FF:10158-103A5 76 years, female 74.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 47.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.1
Samples: 4

Max nTPM: 51.9
Min nTPM: 41.6
Sample A Male 41.6
Sample B Male 45.1
Sample C Female 51.9
Sample D Female 49.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
73732149 Antisense, RP_051121_04_A07, Mouse strain C57BL/6J (56 days, male) 4.6
68151390 Antisense, RP_041116_01_B01, Mouse strain C57BL/6J (56 days, male) 1.0
70474929 Antisense, RP_050623_01_D07, Mouse strain C57BL/6J (56 days, male) 0.5
73930854 Antisense, RP_051214_04_D07, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.