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VPS29
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:48.7 nTPM
HPA:48.7 nTPM
GTEx:51.7 nTPM
FANTOM5:91.2 Scaled Tags Per Million
Pig:53.3 nTPM
Mouse:170.8 nTPM
Allen mouse:8.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039748
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 48.7
Sample id Sample description nTPM
Hippocampus
nTPM: 45.2
1898 Male, age 80, left hemisphere 49.1
1855 Male, age 76, left hemisphere 45.8
2529 Female, age 94, left hemisphere 45.3
1911 Female, age 85, right hemisphere 44.8
2621 Female, age 67, right hemisphere 43.5
2148 Female, age 91, left hemisphere 42.6
Dentate gyrus
nTPM: 45.1
1927 Female, age 91, both hemispheres 47.8
2010 Male, age 76, both hemispheres 47.7
2528 Male, age 74, both hemispheres 45.2
2246 Female, age 85, both hemispheres 44.9
2530 Female, age 94, left hemisphere 43.7
2531 Female, age 67, both hemispheres 41.2
Entorhinal gyrus
nTPM: 44.3
1938 Female, age 85, left hemisphere 47.3
1787 Male, age 76, left hemisphere 46.1
2764 Male, age 80, right hemisphere 44.1
2613 Female, age 94, left hemisphere 43.6
2117 Female, age 91, right hemisphere 43.0
2686 Male, age 75, right hemisphere 41.5
Hippocampus, CA1
nTPM: 46.3
2749 Male, age 80, left hemisphere 49.8
1873 Female, age 85, both hemispheres 46.9
2045 Male, age 76, both hemispheres 46.3
2527 Male, age 74, both hemispheres 44.6
2082 Female, age 91, right hemisphere 43.7
Hippocampus, CA2
nTPM: 46.2
1892 Male, age 76, both hemispheres 50.4
2249 Male, age 74, both hemispheres 47.1
1963 Male, age 80, left hemisphere 45.8
1940 Female, age 85, left hemisphere 45.1
2437 Female, age 94, left hemisphere 44.8
2113 Female, age 91, right hemisphere 43.9
Hippocampus, CA3
nTPM: 45.9
1867 Male, age 76, both hemispheres 48.2
2137 Male, age 80, left hemisphere 47.5
1891 Female, age 85, both hemispheres 47.1
2436 Male, age 74, both hemispheres 46.1
2620 Female, age 94, left hemisphere 44.5
2861 Female, age 67, both hemispheres 42.1
Parahippocampal cortex
nTPM: 45.3
1850 Male, age 80, both hemispheres 49.3
1933 Female, age 85, both hemispheres 48.3
1990 Female, age 91, right hemisphere 46.8
2018 Male, age 76, both hemispheres 46.0
2250 Female, age 67, right hemisphere 45.9
2532 Female, age 72, left hemisphere 44.5
2693 Female, age 94, both hemispheres 44.4
2692 Male, age 74, both hemispheres 43.3
2245 Female, age 91, both hemispheres 43.2
2622 Female, age 67, right hemisphere 41.0
Perirhinal gyrus
nTPM: 48.7
1847 Female, age 91, left hemisphere 50.0
1794 Male, age 80, right hemisphere 49.9
1841 Female, age 85, right hemisphere 49.7
2848 Male, age 76, right hemisphere 47.4
2521 Female, age 94, right hemisphere 46.4
Subiculum
nTPM: 43.9
1977 Female, age 85, both hemispheres 46.6
1901 Male, age 80, both hemispheres 45.1
2729 Female, age 91, right hemisphere 43.9
2042 Male, age 76, both hemispheres 43.8
2619 Male, age 74, both hemispheres 42.9
2438 Female, age 94, left hemisphere 40.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 51.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 51.7
Samples: 197

Max nTPM: 137.7
Min nTPM: 30.2
Std nTPM: 13.6
Median nTPM: 49.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 137.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 98.0
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 87.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 87.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 82.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 81.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 78.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 75.6
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 75.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 75.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 72.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 91.2
FF:10169-103B7 60 years, female 111.9
FF:10153-102I9 76 years, female 70.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 53.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 53.3
Samples: 4

Max nTPM: 64.1
Min nTPM: 44.0
Sample A Female 64.1
Sample B Female 53.1
Sample C Male 51.9
Sample D Male 44.0
Entorhinal cortex
nTPM: 41.3
Samples: 4

Max nTPM: 47.3
Min nTPM: 36.3
Sample A Female 41.3
Sample B Female 47.3
Sample C Male 40.2
Sample D Male 36.3
Subiculum
nTPM: 45.4
Samples: 4

Max nTPM: 53.3
Min nTPM: 39.8
Sample A Female 53.3
Sample B Female 42.7
Sample C Male 39.8
Sample D Male 45.9
Ventral hippocampus
nTPM: 45.9
Samples: 4

Max nTPM: 57.0
Min nTPM: 37.9
Sample A Female 49.8
Sample B Female 38.7
Sample C Male 37.9
Sample D Male 57.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 170.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 127.4
Samples: 4

Max nTPM: 145.6
Min nTPM: 113.5
Sample A Male 117.3
Sample B Male 133.1
Sample C Female 145.6
Sample D Female 113.5
Hippocampal formation
nTPM: 170.9
Samples: 4

Max nTPM: 190.1
Min nTPM: 150.3
Sample A Male 190.1
Sample B Male 150.3
Sample C Female 180.8
Sample D Female 162.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.0
76097708 Antisense, RP_060626_01_C04, Mouse strain C57BL/6J (56 days, male) 8.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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