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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:44.5 nTPM
HPA:44.5 nTPM
GTEx:32.8 nTPM
FANTOM5:42.1 Scaled Tags Per Million
Pig:23.1 nTPM
Mouse:28.5 nTPM
Allen mouse:11.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA057338
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 42.5
2846 Female, age 79, unknown 43.5
2481 Female, age 94, left hemisphere 43.1
2288 Male, age 75, left hemisphere 43.0
1854 Male, age 80, left hemisphere 42.9
1857 Female, age 85, left hemisphere 42.8
1781 Male, age 74, unknown 42.3
2290 Female, age 72, unknown 41.5
2289 Male, age 61, right hemisphere 40.6
Claustrum
nTPM: 42.9
2491 Male, age 75, both hemispheres 44.1
1956 Male, age 74, unknown 44.0
2198 Male, age 80, both hemispheres 44.0
2392 Female, age 94, both hemispheres 44.0
2284 Female, age 91, both hemispheres 42.7
2568 Male, age 61, both hemispheres 42.4
2292 Female, age 85, both hemispheres 42.2
2196 Female, age 79, unknown 41.7
2645 Female, age 72, unknown 41.4
Globus pallidus, externus
nTPM: 44.3
1996 Male, age 80, right hemisphere 45.3
2772 Female, age 79, unknown 45.0
2395 Male, age 75, both hemispheres 44.0
2567 Female, age 72, unknown 44.0
2646 Male, age 61, right hemisphere 43.1
Globus pallidus, internus
nTPM: 44.5
2778 Female, age 91, both hemispheres 45.9
2483 Female, age 94, right hemisphere 45.6
2111 Female, age 85, right hemisphere 45.3
2287 Male, age 75, right hemisphere 45.2
1818 Male, age 74, unknown 44.2
2566 Female, age 72, unknown 42.9
2037 Male, age 80, right hemisphere 42.4
Nucleus accumbens
nTPM: 43.7
2391 Female, age 94, left hemisphere 46.1
1856 Female, age 91, right hemisphere 44.6
1783 Male, age 74, unknown 43.8
2824 Male, age 61, right hemisphere 43.7
2286 Male, age 75, left hemisphere 43.2
2698 Female, age 72, unknown 43.1
1806 Female, age 85, left hemisphere 42.9
2732 Male, age 80, right hemisphere 42.4
Nucleus basalis of Meynert
nTPM: 43.0
2484 Female, age 94, left hemisphere 43.7
2569 Male, age 61, both hemispheres 43.1
2393 Male, age 80, right hemisphere 42.9
2821 Male, age 75, both hemispheres 42.4
Nucleus of the diagonal band
nTPM: 43.6
2029 Male, age 61, right hemisphere 45.7
2775 Male, age 80, right hemisphere 44.3
1812 Female, age 91, both hemispheres 43.8
1979 Male, age 74, unknown 42.7
2195 Female, age 85, both hemispheres 41.6
Olfactory tubercle
nTPM: 43.7
1846 Male, age 80, right hemisphere 44.8
1998 Female, age 91, both hemispheres 44.6
2487 Female, age 94, left hemisphere 43.8
2856 Male, age 75, right hemisphere 41.8
Putamen
nTPM: 42.9
2482 Female, age 94, left hemisphere 44.5
2647 Male, age 75, left hemisphere 44.3
1937 Female, age 91, right hemisphere 43.3
2466 Female, age 79, unknown 42.8
1838 Male, age 80, right hemisphere 42.7
1829 Male, age 74, unknown 41.5
2489 Female, age 72, unknown 40.9
Septal nuclei
nTPM: 43.0
2031 Female, age 72, unknown 45.1
2059 Female, age 85, both hemispheres 43.5
1960 Male, age 74, unknown 43.2
2199 Male, age 80, right hemisphere 42.9
2009 Female, age 91, both hemispheres 42.7
2394 Male, age 61, left hemisphere 42.2
2629 Female, age 94, right hemisphere 41.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 32.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 30.4
Samples: 246

Max nTPM: 50.5
Min nTPM: 15.8
Std nTPM: 4.9
Median nTPM: 29.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 50.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 45.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 43.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 42.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 42.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 42.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 41.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 40.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 40.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 40.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 39.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.0
Samples: 246

Max nTPM: 50.2
Min nTPM: 13.6
Std nTPM: 5.4
Median nTPM: 32.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 50.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 47.6
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 46.5
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 43.3
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 43.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 42.7
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 42.4
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 42.2
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 42.0
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 41.6
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 41.1
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Brain - Putamen (basal ganglia)
Average nTPM: 32.8
Samples: 205

Max nTPM: 46.7
Min nTPM: 15.8
Std nTPM: 4.7
Median nTPM: 32.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 46.7
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 45.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 45.5
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 43.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 42.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 42.1
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 42.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 41.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 41.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 40.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 40.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 42.1
FF:10164-103B2 76 years, female 42.1
Globus pallidus
Scaled Tags Per Million: 35.1
FF:10161-103A8 76 years, female 43.3
FF:10175-103C4 60 years, female 26.8
Nucleus accumbens
Scaled Tags Per Million: 30.4
FF:10037-101F1 23-56 years, mixed 30.4
Putamen
Scaled Tags Per Million: 34.6
FF:10176-103C5 60 years, female 34.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 23.1
Pig sample Sample description nTPM
Caudate
nTPM: 20.8
Samples: 4

Max nTPM: 24.2
Min nTPM: 17.3
Sample A Female 21.3
Sample B Female 20.4
Sample C Male 24.2
Sample D Male 17.3
Putamen
nTPM: 22.9
Samples: 4

Max nTPM: 25.6
Min nTPM: 18.4
Sample A Female 23.6
Sample B Female 18.4
Sample C Male 25.6
Sample D Male 23.8
Septum
nTPM: 23.1
Samples: 4

Max nTPM: 29.4
Min nTPM: 19.2
Sample A Female 29.4
Sample B Female 22.1
Sample C Male 21.8
Sample D Male 19.2
Ventral pallidum
nTPM: 21.6
Samples: 4

Max nTPM: 26.4
Min nTPM: 17.9
Sample A Female 21.3
Sample B Female 26.4
Sample C Male 17.9
Sample D Male 20.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 28.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 28.5
Samples: 4

Max nTPM: 32.2
Min nTPM: 26.7
Sample A Male 26.7
Sample B Male 27.7
Sample C Female 32.2
Sample D Female 27.5
Septum
nTPM: 25.6
Samples: 4

Max nTPM: 27.0
Min nTPM: 23.7
Sample A Male 23.7
Sample B Male 25.1
Sample C Female 26.4
Sample D Female 27.0
Ventral forebrain
nTPM: 27.7
Samples: 4

Max nTPM: 30.3
Min nTPM: 24.9
Sample A Male 25.7
Sample B Male 24.9
Sample C Female 29.7
Sample D Female 30.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 11.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 11.5
71608385 Antisense, RP_050927_01_F02, Mouse strain C57BL/6J (56 days, male) 12.4
357097 Antisense, RP_040617_02_B01, Mouse strain C57BL/6J (56 days, male) 10.6
Pallidum
Expression energy: 9.8
71608385 Antisense, RP_050927_01_F02, Mouse strain C57BL/6J (56 days, male) 10.3
357097 Antisense, RP_040617_02_B01, Mouse strain C57BL/6J (56 days, male) 9.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.