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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:51.1 nTPM
HPA:51.1 nTPM
GTEx:45.2 nTPM
FANTOM5:71.7 Scaled Tags Per Million
Pig:33.4 nTPM
Mouse:106.0 nTPM
Allen mouse:16.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039905
Glial cells High
Neuronal cells High


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 51.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.7
2288 Male, age 75, left hemisphere 40.2
2846 Female, age 79, unknown 39.0
1781 Male, age 74, unknown 38.6
2481 Female, age 94, left hemisphere 37.9
1857 Female, age 85, left hemisphere 34.9
2290 Female, age 72, unknown 34.4
1854 Male, age 80, left hemisphere 34.3
2289 Male, age 61, right hemisphere 34.0
Claustrum
nTPM: 41.8
2198 Male, age 80, both hemispheres 47.4
2392 Female, age 94, both hemispheres 44.0
1956 Male, age 74, unknown 43.4
2491 Male, age 75, both hemispheres 42.7
2568 Male, age 61, both hemispheres 42.3
2196 Female, age 79, unknown 40.6
2284 Female, age 91, both hemispheres 40.4
2645 Female, age 72, unknown 38.0
2292 Female, age 85, both hemispheres 37.6
Globus pallidus, externus
nTPM: 37.3
2772 Female, age 79, unknown 43.3
2395 Male, age 75, both hemispheres 42.9
1996 Male, age 80, right hemisphere 35.1
2567 Female, age 72, unknown 32.6
2646 Male, age 61, right hemisphere 32.4
Globus pallidus, internus
nTPM: 38.7
2287 Male, age 75, right hemisphere 46.0
2483 Female, age 94, right hemisphere 43.3
2778 Female, age 91, both hemispheres 37.9
1818 Male, age 74, unknown 37.7
2037 Male, age 80, right hemisphere 36.5
2566 Female, age 72, unknown 34.9
2111 Female, age 85, right hemisphere 34.8
Nucleus accumbens
nTPM: 39.6
2824 Male, age 61, right hemisphere 41.9
2286 Male, age 75, left hemisphere 40.7
1856 Female, age 91, right hemisphere 40.4
2391 Female, age 94, left hemisphere 40.4
2698 Female, age 72, unknown 39.6
1783 Male, age 74, unknown 39.1
1806 Female, age 85, left hemisphere 38.7
2732 Male, age 80, right hemisphere 35.8
Nucleus basalis of Meynert
nTPM: 35.9
2484 Female, age 94, left hemisphere 38.2
2821 Male, age 75, both hemispheres 36.6
2393 Male, age 80, right hemisphere 35.2
2569 Male, age 61, both hemispheres 33.6
Nucleus of the diagonal band
nTPM: 51.1
1812 Female, age 91, both hemispheres 57.9
2775 Male, age 80, right hemisphere 57.9
2195 Female, age 85, both hemispheres 50.7
2029 Male, age 61, right hemisphere 47.8
1979 Male, age 74, unknown 41.3
Olfactory tubercle
nTPM: 47.2
1998 Female, age 91, both hemispheres 52.2
1846 Male, age 80, right hemisphere 49.9
2487 Female, age 94, left hemisphere 47.1
2856 Male, age 75, right hemisphere 39.7
Putamen
nTPM: 37.1
1937 Female, age 91, right hemisphere 38.9
2647 Male, age 75, left hemisphere 38.7
2466 Female, age 79, unknown 38.5
2482 Female, age 94, left hemisphere 38.1
1838 Male, age 80, right hemisphere 37.4
1829 Male, age 74, unknown 36.6
2489 Female, age 72, unknown 31.6
Septal nuclei
nTPM: 45.0
2031 Female, age 72, unknown 54.8
1960 Male, age 74, unknown 53.9
2009 Female, age 91, both hemispheres 49.3
2629 Female, age 94, right hemisphere 43.2
2199 Male, age 80, right hemisphere 37.9
2059 Female, age 85, both hemispheres 37.8
2394 Male, age 61, left hemisphere 37.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 45.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 37.0
Samples: 246

Max nTPM: 95.7
Min nTPM: 16.5
Std nTPM: 10.9
Median nTPM: 35.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 95.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 93.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 76.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 73.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 66.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 66.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 59.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 58.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 56.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 56.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 56.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 45.2
Samples: 246

Max nTPM: 79.7
Min nTPM: 15.2
Std nTPM: 12.7
Median nTPM: 46.6
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 79.7
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 75.4
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 74.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 72.8
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 71.0
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 70.2
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 69.6
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 68.6
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 67.9
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 66.9
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 66.9
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Brain - Putamen (basal ganglia)
Average nTPM: 38.2
Samples: 205

Max nTPM: 74.9
Min nTPM: 21.3
Std nTPM: 9.1
Median nTPM: 36.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 74.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 64.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 61.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 61.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 59.7
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 59.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 58.9
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 57.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 56.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 56.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 56.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 44.5
FF:10164-103B2 76 years, female 44.5
Globus pallidus
Scaled Tags Per Million: 32.9
FF:10161-103A8 76 years, female 35.0
FF:10175-103C4 60 years, female 30.7
Nucleus accumbens
Scaled Tags Per Million: 71.7
FF:10037-101F1 23-56 years, mixed 71.7
Putamen
Scaled Tags Per Million: 66.8
FF:10176-103C5 60 years, female 66.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 33.4
Pig sample Sample description nTPM
Caudate
nTPM: 27.5
Samples: 4

Max nTPM: 31.7
Min nTPM: 25.5
Sample A Female 27.0
Sample B Female 25.5
Sample C Male 31.7
Sample D Male 25.9
Putamen
nTPM: 33.4
Samples: 4

Max nTPM: 49.1
Min nTPM: 26.5
Sample A Female 26.5
Sample B Female 27.8
Sample C Male 49.1
Sample D Male 30.2
Septum
nTPM: 31.5
Samples: 4

Max nTPM: 42.0
Min nTPM: 25.2
Sample A Female 32.2
Sample B Female 25.2
Sample C Male 42.0
Sample D Male 26.6
Ventral pallidum
nTPM: 27.7
Samples: 4

Max nTPM: 34.8
Min nTPM: 23.3
Sample A Female 26.0
Sample B Female 26.7
Sample C Male 34.8
Sample D Male 23.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 106.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 68.4
Samples: 4

Max nTPM: 70.8
Min nTPM: 64.4
Sample A Male 68.5
Sample B Male 64.4
Sample C Female 70.0
Sample D Female 70.8
Septum
nTPM: 106.0
Samples: 4

Max nTPM: 109.0
Min nTPM: 101.1
Sample A Male 107.9
Sample B Male 109.0
Sample C Female 106.1
Sample D Female 101.1
Ventral forebrain
nTPM: 83.5
Samples: 4

Max nTPM: 89.1
Min nTPM: 78.8
Sample A Male 78.8
Sample B Male 86.6
Sample C Female 89.1
Sample D Female 79.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 16.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 14.8
67767470 Antisense, RP_040916_02_B10, Mouse strain C57BL/6J (56 days, male) 14.8
Pallidum
Expression energy: 16.3
67767470 Antisense, RP_040916_02_B10, Mouse strain C57BL/6J (56 days, male) 16.3

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The Human Protein Atlas

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