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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:66.8 nTPM
HPA:66.8 nTPM
GTEx:156.6 nTPM
FANTOM5:26.4 Scaled Tags Per Million
Pig:4.9 nTPM
Mouse:38.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 66.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.2
1870 Female, age 42, unknown 63.5
2411 Female, age 72, unknown 63.4
2666 Male, age 74, left hemisphere 62.0
2219 Male, age 76, both hemispheres 60.6
1827 Male, age 72, unknown 60.3
1830 Male, age 51, unknown 59.5
1833 Male, age 53, unknown 59.3
2586 Male, age 75, left hemisphere 57.6
2828 Female, age 72, unknown 56.7
2019 Male, age 18, unknown 49.0
Dorsal raphe nucleus
nTPM: 61.3
2047 Male, age 72, unknown 64.4
2750 Male, age 76, both hemispheres 62.4
1828 Male, age 53, unknown 61.5
2298 Female, age 72, unknown 59.6
2016 Female, age 72, unknown 58.5
Inferior colliculus
nTPM: 66.8
2849 Male, age 72, unknown 68.6
1848 Female, age 42, unknown 67.9
1890 Male, age 53, unknown 67.1
2097 Female, age 72, unknown 63.8
Median raphe nucleus
nTPM: 58.3
2220 Male, age 76, midline 58.3
Pedunculopontine tegmental nucleus
nTPM: 59.7
2334 Male, age 80, both hemispheres 65.2
1921 Female, age 85, both hemispheres 60.0
2338 Male, age 61, both hemispheres 53.9
Periaquaductal grey, anterior
nTPM: 61.4
1947 Male, age 18, unknown 68.2
2502 Female, age 75, unknown 59.8
1795 Male, age 51, unknown 56.3
Periaquaductal grey, dorsal
nTPM: 60.8
1840 Male, age 53, unknown 65.9
2464 Female, age 72, unknown 59.7
2850 Male, age 76, both hemispheres 59.1
1831 Male, age 72, unknown 58.6
Periaquaductal grey, lateral
nTPM: 56.2
2053 Male, age 18, unknown 60.7
2140 Male, age 76, both hemispheres 58.3
2272 Male, age 74, both hemispheres 49.7
Pretectal area
nTPM: 54.2
2825 Male, age 18, unknown 63.8
2316 Male, age 76, right hemisphere 58.0
2224 Female, age 72, unknown 57.6
2667 Female, age 75, unknown 55.2
2407 Male, age 75, both hemispheres 53.1
1817 Female, age 42, unknown 52.5
1815 Male, age 53, unknown 52.3
1816 Male, age 51, unknown 51.7
2273 Male, age 74, both hemispheres 51.4
1944 Female, age 72, unknown 51.0
2007 Male, age 72, unknown 50.1
Red nucleus
nTPM: 62.5
1821 Female, age 72, unknown 69.2
1954 Female, age 42, unknown 67.4
2503 Female, age 72, unknown 66.2
2725 Female, age 75, unknown 65.6
2227 Male, age 72, unknown 65.1
2769 Male, age 72, unknown 64.4
2588 Male, age 74, left hemisphere 63.2
1904 Male, age 53, unknown 61.6
1865 Male, age 51, unknown 61.1
2823 Male, age 76, right hemisphere 59.6
2584 Male, age 75, left hemisphere 55.5
2785 Male, age 18, unknown 51.1
Substantia nigra
nTPM: 63.8
2699 Male, age 18, unknown 69.3
1916 Female, age 42, unknown 67.8
2241 Male, age 72, unknown 67.4
1851 Male, age 51, unknown 66.9
2409 Female, age 72, unknown 66.1
1941 Male, age 53, unknown 63.5
1889 Female, age 72, unknown 60.2
2665 Male, age 74, both hemispheres 59.4
2590 Female, age 75, unknown 59.0
2583 Male, age 75, right hemisphere 58.1
Superior colliculus
nTPM: 56.9
1895 Male, age 76, right hemisphere 63.5
1839 Male, age 51, unknown 63.3
2587 Male, age 74, left hemisphere 62.4
1796 Male, age 53, unknown 57.0
2668 Female, age 75, unknown 56.7
2261 Male, age 18, unknown 56.6
1913 Female, age 42, unknown 52.8
2087 Female, age 72, unknown 52.8
1995 Male, age 72, unknown 52.1
2664 Male, age 75, both hemispheres 51.9
Ventral tegmental area
nTPM: 62.3
1915 Female, age 42, unknown 66.8
2410 Female, age 72, unknown 66.8
2223 Female, age 72, unknown 61.2
2218 Male, age 76, both hemispheres 60.7
1942 Male, age 51, unknown 60.2
2021 Male, age 53, unknown 58.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 156.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 156.6
Samples: 139

Max nTPM: 325.4
Min nTPM: 67.4
Std nTPM: 45.4
Median nTPM: 153.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 325.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 293.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 275.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 274.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 252.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 244.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 243.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 237.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 232.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 224.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 223.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.4
FF:10158-103A5 76 years, female 26.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.9
Pig sample Sample description nTPM
Midbrain
nTPM: 4.6
Samples: 4

Max nTPM: 5.2
Min nTPM: 4.0
Sample A Female 5.2
Sample B Female 4.2
Sample C Male 4.0
Sample D Male 5.0
Periaqueductal gray
nTPM: 4.6
Samples: 3

Max nTPM: 5.0
Min nTPM: 4.2
Sample B Female 4.2
Sample C Male 4.7
Sample D Male 5.0
Substantia nigra
nTPM: 4.9
Samples: 4

Max nTPM: 6.0
Min nTPM: 3.9
Sample A Female 6.0
Sample B Female 3.9
Sample C Male 5.2
Sample D Male 4.3
Superior colliculi
nTPM: 4.2
Samples: 4

Max nTPM: 4.6
Min nTPM: 3.4
Sample A Female 4.4
Sample B Female 3.4
Sample C Male 4.4
Sample D Male 4.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.8
Samples: 4

Max nTPM: 40.8
Min nTPM: 36.6
Sample A Male 40.8
Sample B Male 40.5
Sample C Female 37.3
Sample D Female 36.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71991840 Antisense, RP_051012_03_F01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas project is funded
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