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C6orf62
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:120.6 nTPM
HPA:120.6 nTPM
GTEx:70.9 nTPM
FANTOM5:79.2 Scaled Tags Per Million
Pig:63.0 nTPM
Mouse:69.7 nTPM
Allen mouse:9.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 120.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 104.2
2586 Male, age 75, left hemisphere 129.8
2828 Female, age 72, unknown 110.4
2019 Male, age 18, unknown 109.7
1827 Male, age 72, unknown 106.4
2666 Male, age 74, left hemisphere 106.1
2411 Female, age 72, unknown 102.0
1830 Male, age 51, unknown 97.5
1833 Male, age 53, unknown 97.3
1870 Female, age 42, unknown 96.2
2219 Male, age 76, both hemispheres 86.5
Dorsal raphe nucleus
nTPM: 111.7
1828 Male, age 53, unknown 120.1
2298 Female, age 72, unknown 114.9
2016 Female, age 72, unknown 114.3
2047 Male, age 72, unknown 112.0
2750 Male, age 76, both hemispheres 97.3
Inferior colliculus
nTPM: 105.6
2097 Female, age 72, unknown 110.2
1890 Male, age 53, unknown 109.6
1848 Female, age 42, unknown 104.7
2849 Male, age 72, unknown 97.9
Median raphe nucleus
nTPM: 94.6
2220 Male, age 76, midline 94.6
Pedunculopontine tegmental nucleus
nTPM: 100.2
2338 Male, age 61, both hemispheres 104.9
2334 Male, age 80, both hemispheres 101.2
1921 Female, age 85, both hemispheres 94.5
Periaquaductal grey, anterior
nTPM: 110.1
2502 Female, age 75, unknown 119.0
1947 Male, age 18, unknown 107.6
1795 Male, age 51, unknown 103.9
Periaquaductal grey, dorsal
nTPM: 109.6
2850 Male, age 76, both hemispheres 112.4
1840 Male, age 53, unknown 111.2
1831 Male, age 72, unknown 107.8
2464 Female, age 72, unknown 106.8
Periaquaductal grey, lateral
nTPM: 103.5
2140 Male, age 76, both hemispheres 110.9
2053 Male, age 18, unknown 101.4
2272 Male, age 74, both hemispheres 98.2
Pretectal area
nTPM: 107.5
1816 Male, age 51, unknown 119.6
1817 Female, age 42, unknown 115.7
1944 Female, age 72, unknown 114.2
2007 Male, age 72, unknown 111.4
2667 Female, age 75, unknown 110.8
1815 Male, age 53, unknown 110.5
2407 Male, age 75, both hemispheres 105.4
2273 Male, age 74, both hemispheres 105.0
2825 Male, age 18, unknown 97.7
2316 Male, age 76, right hemisphere 96.2
2224 Female, age 72, unknown 96.1
Red nucleus
nTPM: 105.6
1821 Female, age 72, unknown 116.7
1954 Female, age 42, unknown 112.4
2588 Male, age 74, left hemisphere 107.8
1904 Male, age 53, unknown 107.4
2503 Female, age 72, unknown 106.7
1865 Male, age 51, unknown 104.8
2584 Male, age 75, left hemisphere 103.4
2227 Male, age 72, unknown 103.1
2785 Male, age 18, unknown 102.9
2769 Male, age 72, unknown 101.8
2725 Female, age 75, unknown 101.0
2823 Male, age 76, right hemisphere 99.7
Substantia nigra
nTPM: 120.6
1916 Female, age 42, unknown 145.3
2699 Male, age 18, unknown 127.4
2241 Male, age 72, unknown 126.5
1851 Male, age 51, unknown 124.8
2665 Male, age 74, both hemispheres 118.8
2583 Male, age 75, right hemisphere 117.3
2590 Female, age 75, unknown 112.6
1941 Male, age 53, unknown 111.7
1889 Female, age 72, unknown 111.0
2409 Female, age 72, unknown 110.6
Superior colliculus
nTPM: 105.7
2664 Male, age 75, both hemispheres 123.2
2087 Female, age 72, unknown 112.4
2261 Male, age 18, unknown 109.9
1995 Male, age 72, unknown 108.1
2668 Female, age 75, unknown 104.6
1913 Female, age 42, unknown 102.5
1796 Male, age 53, unknown 102.3
2587 Male, age 74, left hemisphere 101.9
1839 Male, age 51, unknown 100.2
1895 Male, age 76, right hemisphere 91.5
Ventral tegmental area
nTPM: 109.4
2410 Female, age 72, unknown 119.0
1915 Female, age 42, unknown 118.5
1942 Male, age 51, unknown 112.1
2021 Male, age 53, unknown 107.1
2218 Male, age 76, both hemispheres 101.6
2223 Female, age 72, unknown 98.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 70.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.9
Samples: 139

Max nTPM: 128.4
Min nTPM: 35.2
Std nTPM: 17.7
Median nTPM: 68.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 128.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 125.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 117.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 107.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 105.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 104.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 104.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 103.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 101.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 100.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 99.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.2
FF:10158-103A5 76 years, female 79.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.0
Pig sample Sample description nTPM
Midbrain
nTPM: 63.0
Samples: 4

Max nTPM: 70.3
Min nTPM: 55.2
Sample A Female 70.3
Sample B Female 59.1
Sample C Male 67.5
Sample D Male 55.2
Periaqueductal gray
nTPM: 53.9
Samples: 3

Max nTPM: 56.8
Min nTPM: 50.3
Sample B Female 54.7
Sample C Male 56.8
Sample D Male 50.3
Substantia nigra
nTPM: 58.9
Samples: 4

Max nTPM: 61.7
Min nTPM: 54.8
Sample A Female 61.7
Sample B Female 54.8
Sample C Male 61.4
Sample D Male 57.5
Superior colliculi
nTPM: 60.4
Samples: 4

Max nTPM: 63.2
Min nTPM: 57.0
Sample A Female 61.3
Sample B Female 57.0
Sample C Male 63.2
Sample D Male 60.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 69.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.7
Samples: 4

Max nTPM: 74.5
Min nTPM: 65.7
Sample A Male 71.5
Sample B Male 67.2
Sample C Female 74.5
Sample D Female 65.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.4
321201 Antisense, RP_040617_01_C03, Mouse strain C57BL/6J (56 days, male) 9.4
275692 Antisense, RP_040617_01_C03, Mouse strain C57BL/6J (56 days, male) 8.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.