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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:4.2 nTPM
HPA:4.2 nTPM
GTEx:7.5 nTPM
FANTOM5:2.3 Scaled Tags Per Million
Pig:3.2 nTPM
Mouse:1.2 nTPM
Allen mouse:0.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA049973
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.2
1857 Female, age 85, left hemisphere 5.7
2290 Female, age 72, unknown 5.1
1854 Male, age 80, left hemisphere 4.4
2481 Female, age 94, left hemisphere 3.8
2846 Female, age 79, unknown 3.8
2289 Male, age 61, right hemisphere 3.6
1781 Male, age 74, unknown 3.5
2288 Male, age 75, left hemisphere 3.4
Claustrum
nTPM: 2.8
2196 Female, age 79, unknown 3.7
2292 Female, age 85, both hemispheres 3.7
2645 Female, age 72, unknown 3.0
1956 Male, age 74, unknown 2.8
2284 Female, age 91, both hemispheres 2.7
2198 Male, age 80, both hemispheres 2.6
2491 Male, age 75, both hemispheres 2.3
2568 Male, age 61, both hemispheres 2.2
2392 Female, age 94, both hemispheres 2.1
Globus pallidus, externus
nTPM: 2.9
2567 Female, age 72, unknown 3.5
2646 Male, age 61, right hemisphere 3.2
1996 Male, age 80, right hemisphere 2.7
2395 Male, age 75, both hemispheres 2.6
2772 Female, age 79, unknown 2.3
Globus pallidus, internus
nTPM: 3.0
2566 Female, age 72, unknown 3.7
1818 Male, age 74, unknown 3.3
2037 Male, age 80, right hemisphere 3.2
2483 Female, age 94, right hemisphere 3.0
2111 Female, age 85, right hemisphere 2.9
2778 Female, age 91, both hemispheres 2.4
2287 Male, age 75, right hemisphere 2.3
Nucleus accumbens
nTPM: 3.7
1806 Female, age 85, left hemisphere 4.7
2698 Female, age 72, unknown 4.2
2732 Male, age 80, right hemisphere 4.0
1783 Male, age 74, unknown 3.8
2286 Male, age 75, left hemisphere 3.7
1856 Female, age 91, right hemisphere 3.3
2824 Male, age 61, right hemisphere 3.1
2391 Female, age 94, left hemisphere 2.6
Nucleus basalis of Meynert
nTPM: 3.8
2569 Male, age 61, both hemispheres 4.6
2821 Male, age 75, both hemispheres 4.2
2393 Male, age 80, right hemisphere 3.2
2484 Female, age 94, left hemisphere 3.2
Nucleus of the diagonal band
nTPM: 3.1
1812 Female, age 91, both hemispheres 3.3
1979 Male, age 74, unknown 3.3
2195 Female, age 85, both hemispheres 3.1
2775 Male, age 80, right hemisphere 3.0
2029 Male, age 61, right hemisphere 2.8
Olfactory tubercle
nTPM: 2.8
1846 Male, age 80, right hemisphere 3.1
2856 Male, age 75, right hemisphere 2.9
1998 Female, age 91, both hemispheres 2.7
2487 Female, age 94, left hemisphere 2.4
Putamen
nTPM: 3.6
1838 Male, age 80, right hemisphere 4.1
2482 Female, age 94, left hemisphere 4.1
2489 Female, age 72, unknown 3.9
2647 Male, age 75, left hemisphere 3.6
1937 Female, age 91, right hemisphere 3.3
1829 Male, age 74, unknown 2.9
2466 Female, age 79, unknown 2.8
Septal nuclei
nTPM: 3.2
2394 Male, age 61, left hemisphere 4.0
2059 Female, age 85, both hemispheres 3.7
2199 Male, age 80, right hemisphere 3.6
2629 Female, age 94, right hemisphere 3.0
2031 Female, age 72, unknown 2.9
2009 Female, age 91, both hemispheres 2.8
1960 Male, age 74, unknown 2.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7.5
Samples: 246

Max nTPM: 32.0
Min nTPM: 0.4
Std nTPM: 4.0
Median nTPM: 6.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 32.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 23.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 22.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 20.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 18.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 17.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 16.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 15.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 15.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 14.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 14.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.4
Samples: 246

Max nTPM: 26.8
Min nTPM: 1.5
Std nTPM: 4.0
Median nTPM: 6.4
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 26.8
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 24.1
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 22.5
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 21.5
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 18.5
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 17.8
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 17.3
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 16.8
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 16.8
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 16.1
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 15.7
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Brain - Putamen (basal ganglia)
Average nTPM: 6.5
Samples: 205

Max nTPM: 20.8
Min nTPM: 2.0
Std nTPM: 3.3
Median nTPM: 5.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 20.8
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 19.8
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 19.3
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 15.4
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 15.4
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 15.0
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 14.3
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 14.2
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 13.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 13.3
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 13.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.1
FF:10164-103B2 76 years, female 2.1
Globus pallidus
Scaled Tags Per Million: 2.0
FF:10175-103C4 60 years, female 2.3
FF:10161-103A8 76 years, female 1.8
Nucleus accumbens
Scaled Tags Per Million: 2.2
FF:10037-101F1 23-56 years, mixed 2.2
Putamen
Scaled Tags Per Million: 2.3
FF:10176-103C5 60 years, female 2.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.2
Pig sample Sample description nTPM
Caudate
nTPM: 3.2
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.4
Sample A Female 3.8
Sample B Female 3.1
Sample C Male 3.3
Sample D Male 2.4
Putamen
nTPM: 3.0
Samples: 4

Max nTPM: 5.3
Min nTPM: 1.9
Sample A Female 5.3
Sample B Female 2.4
Sample C Male 1.9
Sample D Male 2.5
Septum
nTPM: 3.2
Samples: 4

Max nTPM: 4.2
Min nTPM: 2.2
Sample A Female 3.8
Sample B Female 2.2
Sample C Male 4.2
Sample D Male 2.6
Ventral pallidum
nTPM: 2.9
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.0
Sample A Female 3.4
Sample B Female 2.0
Sample C Male 3.3
Sample D Male 2.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.3
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.0
Sample A Male 0.6
Sample B Male 0.3
Sample C Female 0.0
Sample D Female 0.2
Septum
nTPM: 0.7
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.4
Sample A Male 0.9
Sample B Male 0.4
Sample C Female 1.0
Sample D Female 0.4
Ventral forebrain
nTPM: 1.3
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.7
Sample A Male 1.8
Sample B Male 1.6
Sample C Female 0.7
Sample D Female 0.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
275690 Antisense, RP_040617_01_B12, Mouse strain C57BL/6J (56 days, male) 0.8
112648831 Antisense, RP_110421_01_A07, Mouse strain C57BL/6J (56 days, male) 0.1
71991834 Antisense, RP_051012_03_E12, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.3
275690 Antisense, RP_040617_01_B12, Mouse strain C57BL/6J (56 days, male) 0.9
112648831 Antisense, RP_110421_01_A07, Mouse strain C57BL/6J (56 days, male) 0.0
71991834 Antisense, RP_051012_03_E12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.