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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.7 nTPM
HPA:27.7 nTPM
GTEx:33.7 nTPM
FANTOM5:61.7 Scaled Tags Per Million
Pig:22.6 nTPM
Mouse:6.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.4
1830 Male, age 51, unknown 28.8
2586 Male, age 75, left hemisphere 27.3
2019 Male, age 18, unknown 26.6
1833 Male, age 53, unknown 26.1
2411 Female, age 72, unknown 24.3
1870 Female, age 42, unknown 23.7
2828 Female, age 72, unknown 23.2
2666 Male, age 74, left hemisphere 19.9
1827 Male, age 72, unknown 18.0
2219 Male, age 76, both hemispheres 16.5
Dorsal raphe nucleus
nTPM: 17.8
2750 Male, age 76, both hemispheres 24.1
2016 Female, age 72, unknown 19.2
1828 Male, age 53, unknown 18.0
2047 Male, age 72, unknown 15.2
2298 Female, age 72, unknown 12.4
Inferior colliculus
nTPM: 17.2
1890 Male, age 53, unknown 19.0
2849 Male, age 72, unknown 18.3
1848 Female, age 42, unknown 17.2
2097 Female, age 72, unknown 14.2
Median raphe nucleus
nTPM: 16.2
2220 Male, age 76, midline 16.2
Pedunculopontine tegmental nucleus
nTPM: 18.9
2338 Male, age 61, both hemispheres 20.5
2334 Male, age 80, both hemispheres 19.3
1921 Female, age 85, both hemispheres 16.9
Periaquaductal grey, anterior
nTPM: 16.8
2502 Female, age 75, unknown 18.9
1947 Male, age 18, unknown 16.8
1795 Male, age 51, unknown 14.8
Periaquaductal grey, dorsal
nTPM: 15.3
2464 Female, age 72, unknown 18.6
1831 Male, age 72, unknown 15.8
2850 Male, age 76, both hemispheres 15.5
1840 Male, age 53, unknown 11.4
Periaquaductal grey, lateral
nTPM: 17.0
2272 Male, age 74, both hemispheres 18.2
2140 Male, age 76, both hemispheres 16.5
2053 Male, age 18, unknown 16.3
Pretectal area
nTPM: 17.0
2407 Male, age 75, both hemispheres 22.9
2316 Male, age 76, right hemisphere 22.6
1815 Male, age 53, unknown 18.9
2667 Female, age 75, unknown 17.9
2825 Male, age 18, unknown 17.6
1817 Female, age 42, unknown 17.0
2007 Male, age 72, unknown 16.8
2273 Male, age 74, both hemispheres 15.4
2224 Female, age 72, unknown 13.3
1944 Female, age 72, unknown 12.7
1816 Male, age 51, unknown 12.4
Red nucleus
nTPM: 27.7
2769 Male, age 72, unknown 31.6
1865 Male, age 51, unknown 31.1
2227 Male, age 72, unknown 30.4
1904 Male, age 53, unknown 30.1
2785 Male, age 18, unknown 29.5
2823 Male, age 76, right hemisphere 29.1
2588 Male, age 74, left hemisphere 26.7
2584 Male, age 75, left hemisphere 26.6
1821 Female, age 72, unknown 26.3
2503 Female, age 72, unknown 25.7
1954 Female, age 42, unknown 25.0
2725 Female, age 75, unknown 20.1
Substantia nigra
nTPM: 18.1
2583 Male, age 75, right hemisphere 24.2
2590 Female, age 75, unknown 20.7
2699 Male, age 18, unknown 20.0
1851 Male, age 51, unknown 18.9
2409 Female, age 72, unknown 18.6
1889 Female, age 72, unknown 17.5
2665 Male, age 74, both hemispheres 17.4
1941 Male, age 53, unknown 16.3
1916 Female, age 42, unknown 14.1
2241 Male, age 72, unknown 13.6
Superior colliculus
nTPM: 20.5
1913 Female, age 42, unknown 28.9
1995 Male, age 72, unknown 27.0
1895 Male, age 76, right hemisphere 21.8
1839 Male, age 51, unknown 21.3
2664 Male, age 75, both hemispheres 19.8
2587 Male, age 74, left hemisphere 19.5
2668 Female, age 75, unknown 19.2
1796 Male, age 53, unknown 18.6
2087 Female, age 72, unknown 14.6
2261 Male, age 18, unknown 14.3
Ventral tegmental area
nTPM: 19.3
2223 Female, age 72, unknown 24.0
2410 Female, age 72, unknown 20.8
1942 Male, age 51, unknown 19.0
2021 Male, age 53, unknown 18.7
2218 Male, age 76, both hemispheres 16.8
1915 Female, age 42, unknown 16.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.7
Samples: 139

Max nTPM: 116.3
Min nTPM: 14.2
Std nTPM: 15.0
Median nTPM: 30.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 116.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 90.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 75.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 73.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 68.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 67.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 64.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 58.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 56.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 54.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 53.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.7
FF:10158-103A5 76 years, female 61.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.6
Pig sample Sample description nTPM
Midbrain
nTPM: 22.0
Samples: 4

Max nTPM: 39.6
Min nTPM: 12.8
Sample A Female 39.6
Sample B Female 21.2
Sample C Male 12.8
Sample D Male 14.5
Periaqueductal gray
nTPM: 18.3
Samples: 3

Max nTPM: 19.4
Min nTPM: 17.5
Sample B Female 19.4
Sample C Male 17.5
Sample D Male 18.1
Substantia nigra
nTPM: 22.6
Samples: 4

Max nTPM: 31.3
Min nTPM: 17.8
Sample A Female 22.2
Sample B Female 17.8
Sample C Male 19.1
Sample D Male 31.3
Superior colliculi
nTPM: 18.9
Samples: 4

Max nTPM: 22.9
Min nTPM: 14.8
Sample A Female 22.9
Sample B Female 14.8
Sample C Male 16.7
Sample D Male 21.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.8
Samples: 4

Max nTPM: 8.0
Min nTPM: 5.1
Sample A Male 8.0
Sample B Male 6.1
Sample C Female 5.1
Sample D Female 8.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69290650 Antisense, RP_050407_04_D10, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.