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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.7 nTPM
HPA:12.7 nTPM
GTEx:13.6 nTPM
FANTOM5:14.7 Scaled Tags Per Million
Pig:0.2 nTPM
Mouse:3.4 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.7
2290 Female, age 72, unknown 16.0
1857 Female, age 85, left hemisphere 14.8
1854 Male, age 80, left hemisphere 14.0
2846 Female, age 79, unknown 13.9
1781 Male, age 74, unknown 12.5
2289 Male, age 61, right hemisphere 10.5
2481 Female, age 94, left hemisphere 10.5
2288 Male, age 75, left hemisphere 9.7
Claustrum
nTPM: 9.2
2196 Female, age 79, unknown 10.0
2292 Female, age 85, both hemispheres 9.5
2392 Female, age 94, both hemispheres 9.2
2198 Male, age 80, both hemispheres 9.1
2645 Female, age 72, unknown 9.1
2284 Female, age 91, both hemispheres 9.0
2491 Male, age 75, both hemispheres 9.0
2568 Male, age 61, both hemispheres 9.0
1956 Male, age 74, unknown 8.6
Globus pallidus, externus
nTPM: 10.8
2567 Female, age 72, unknown 11.5
1996 Male, age 80, right hemisphere 10.8
2772 Female, age 79, unknown 10.8
2395 Male, age 75, both hemispheres 10.5
2646 Male, age 61, right hemisphere 10.2
Globus pallidus, internus
nTPM: 10.7
2483 Female, age 94, right hemisphere 12.1
1818 Male, age 74, unknown 11.1
2287 Male, age 75, right hemisphere 10.8
2037 Male, age 80, right hemisphere 10.7
2566 Female, age 72, unknown 10.2
2111 Female, age 85, right hemisphere 9.9
2778 Female, age 91, both hemispheres 9.8
Nucleus accumbens
nTPM: 12.5
1783 Male, age 74, unknown 15.3
1856 Female, age 91, right hemisphere 14.4
1806 Female, age 85, left hemisphere 14.3
2824 Male, age 61, right hemisphere 13.3
2698 Female, age 72, unknown 12.3
2391 Female, age 94, left hemisphere 10.1
2732 Male, age 80, right hemisphere 10.1
2286 Male, age 75, left hemisphere 9.9
Nucleus basalis of Meynert
nTPM: 11.4
2393 Male, age 80, right hemisphere 11.8
2821 Male, age 75, both hemispheres 11.6
2484 Female, age 94, left hemisphere 11.4
2569 Male, age 61, both hemispheres 10.9
Nucleus of the diagonal band
nTPM: 8.9
2029 Male, age 61, right hemisphere 9.6
1979 Male, age 74, unknown 8.9
2775 Male, age 80, right hemisphere 8.9
1812 Female, age 91, both hemispheres 8.7
2195 Female, age 85, both hemispheres 8.5
Olfactory tubercle
nTPM: 9.0
2856 Male, age 75, right hemisphere 9.6
1846 Male, age 80, right hemisphere 9.2
1998 Female, age 91, both hemispheres 8.7
2487 Female, age 94, left hemisphere 8.6
Putamen
nTPM: 12.7
1838 Male, age 80, right hemisphere 15.5
2489 Female, age 72, unknown 13.6
1937 Female, age 91, right hemisphere 13.2
2466 Female, age 79, unknown 12.4
1829 Male, age 74, unknown 12.2
2482 Female, age 94, left hemisphere 11.5
2647 Male, age 75, left hemisphere 10.5
Septal nuclei
nTPM: 9.1
2394 Male, age 61, left hemisphere 10.4
2199 Male, age 80, right hemisphere 9.6
2031 Female, age 72, unknown 9.1
2009 Female, age 91, both hemispheres 8.7
2059 Female, age 85, both hemispheres 8.6
2629 Female, age 94, right hemisphere 8.6
1960 Male, age 74, unknown 8.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.7
Samples: 246

Max nTPM: 44.1
Min nTPM: 1.8
Std nTPM: 5.6
Median nTPM: 12.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 44.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 34.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 30.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 27.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 26.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 25.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 24.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 24.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 23.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 23.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 22.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.4
Samples: 246

Max nTPM: 31.9
Min nTPM: 1.8
Std nTPM: 5.2
Median nTPM: 10.9
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 31.9
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 29.5
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 27.9
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 25.7
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 24.3
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 24.1
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 22.6
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 22.4
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 22.4
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 22.3
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 22.0
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Brain - Putamen (basal ganglia)
Average nTPM: 13.6
Samples: 205

Max nTPM: 34.3
Min nTPM: 4.2
Std nTPM: 5.4
Median nTPM: 12.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 34.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 30.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 29.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 28.4
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 27.0
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 26.2
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 25.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 25.5
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 25.2
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 23.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 23.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 9.6
FF:10164-103B2 76 years, female 9.6
Globus pallidus
Scaled Tags Per Million: 5.0
FF:10161-103A8 76 years, female 5.4
FF:10175-103C4 60 years, female 4.7
Nucleus accumbens
Scaled Tags Per Million: 14.7
FF:10037-101F1 23-56 years, mixed 14.7
Putamen
Scaled Tags Per Million: 13.0
FF:10176-103C5 60 years, female 13.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.2
Pig sample Sample description nTPM
Caudate
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.1
Sample D Male 0.0
Ventral pallidum
nTPM: 0.2
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.6
Sample C Male 0.1
Sample D Male 0.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.0
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.2
Sample A Male 0.6
Sample B Male 0.2
Sample C Female 1.6
Sample D Female 1.6
Septum
nTPM: 1.8
Samples: 4

Max nTPM: 3.1
Min nTPM: 0.8
Sample A Male 3.1
Sample B Male 1.7
Sample C Female 1.4
Sample D Female 0.8
Ventral forebrain
nTPM: 3.4
Samples: 4

Max nTPM: 4.9
Min nTPM: 2.6
Sample A Male 3.2
Sample B Male 2.9
Sample C Female 4.9
Sample D Female 2.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
71627820 Antisense, RP_050927_03_C05, Mouse strain C57BL/6J (56 days, male) 0.1
74357576 Antisense, RP_050927_03_C05, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
74357576 Antisense, RP_050927_03_C05, Mouse strain C57BL/6J (56 days, male) 0.0
71627820 Antisense, RP_050927_03_C05, Mouse strain C57BL/6J (56 days, male) 0.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.