Single cell type - PPP2R5D - The Human Protein Atlas

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	PPP2R5D
Gene descriptionⁱ Full gene name according to HGNC.	Protein phosphatase 2 regulatory subunit B'delta
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Disease related genes Human disease related genes
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	6

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type expression clusterⁱ The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity. Read more	Enterocytes - Digestion (mainly)
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Proximal enterocytes)
Immune cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low immune cell specificity
Immune cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines. Read more	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines. Read more	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (nTPM) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Proximal enterocytes)

SINGLE CELL TISSUES OVERVIEWⁱ An overview of all tissues where single cell type expression has been analyzed. Each tissue name and corresponding UMAP plot is clickable and redirects to the selected tissue.
Adipose tissue Bone marrow Brain Breast Bronchus Colon Endometrium Esophagus Eye Heart muscle Kidney Liver Lung Lymph node Ovary Pancreas Placenta Prostate Rectum Skeletal muscle Skin Small intestine Spleen Stomach Testis

EXPRESSION CLUSTERING & CORRELATIONⁱ

PPP2R5D is part of cluster 45 Enterocytes - Digestion with confidenceⁱ 1
268 genes in cluster

Go to interactive expression cluster page

15 nearest neighbours based on single cell type RNA expression

Neighbourⁱ Gene name according to HGNC.	Descriptionⁱ Gene description according to HGNC.	Correlationⁱ Correlation between the selected gene and neighboring gene. Correlation is calculated as Spearman correlation in PCA space based on the RNA-seq expression data. Read more	Clusterⁱ ID of the expression cluster of the neighboring gene. Read more
CES2	Carboxylesterase 2	0.7132	45
MOGAT2	Monoacylglycerol O-acyltransferase 2	0.7068	45
FABP1	Fatty acid binding protein 1	0.6952	45
SLC6A19	Solute carrier family 6 member 19	0.6900	45
TMEM150B	Transmembrane protein 150B	0.6824	45
TM6SF2	Transmembrane 6 superfamily member 2	0.6816	45
TMEM37	Transmembrane protein 37	0.6780	45
MTTP	Microsomal triglyceride transfer protein	0.6764	45
ALPI	Alkaline phosphatase, intestinal	0.6745	45
CREB3L3	CAMP responsive element binding protein 3 like 3	0.6699	45
FADS6	Fatty acid desaturase 6	0.6646	45
HECTD3	HECT domain E3 ubiquitin protein ligase 3	0.6644	45
SLC10A2	Solute carrier family 10 member 2	0.6634	45
TMEM253	Transmembrane protein 253	0.6623	45
CPO	Carboxypeptidase O	0.6589	45

SINGLE CELL TISSUESⁱ Single cell RNA levels of annotated cell type clusters are shown separately for each analyzed tissue. For easier navigation across tissues, use the above Single cell tissue overview, where each tissue name and UMAP plot is clickable and redirects to the selected tissue, alternatively the grey browser on the left side of the window. Barchart shows nTPM levels in each annotated cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Adipose tissue
Cluster Expression Alphabetical Bone marrow
Cluster Expression Alphabetical Brain
Cluster Expression Alphabetical Breast
Cluster Expression Alphabetical Bronchus
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Endometrium
Cluster Expression Alphabetical Esophagus
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Lymph node
Cluster Expression Alphabetical Ovary
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skeletal muscle
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Spleen
Cluster Expression Alphabetical Stomach
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ

Organ

Expression

Alphabetical

Adipocytes	6.2 nTPM
Adipose tissue	6.7 nTPM
Breast	5.8 nTPM

Alveolar cells type 1	9.6 nTPM
Lung	9.6 nTPM

Alveolar cells type 2	6.7 nTPM
Lung	6.7 nTPM

Astrocytes	6.8 nTPM
Brain	6.8 nTPM

B-cells	7.6 nTPM
Lymph node	14.3 nTPM
Bone marrow	11.5 nTPM
Spleen	11.4 nTPM
Liver	11.2 nTPM
Kidney	9.5 nTPM
Stomach	8.6 nTPM
PBMC	2.8 nTPM
Breast	2.6 nTPM
Adipose tissue	2.5 nTPM
Colon	1.6 nTPM

Dendritic cells	10.1 nTPM
PBMC	12.0 nTPM
Adipose tissue	10.7 nTPM
Breast	7.6 nTPM

Endothelial cells	7.4 nTPM
Esophagus	11.2 nTPM
Endometrium	11.0 nTPM
Ovary	11.0 nTPM
Heart muscle	8.2 nTPM
Placenta	8.0 nTPM
Pancreas	7.7 nTPM
Eye	7.3 nTPM
Testis	6.8 nTPM
Breast	6.4 nTPM
Lung	6.2 nTPM
Skeletal muscle	6.0 nTPM
Skin	5.5 nTPM
Prostate	4.3 nTPM
Liver	3.7 nTPM

Fibroblasts	9.7 nTPM
Adipose tissue	15.4 nTPM
Esophagus	14.0 nTPM
Ovary	13.5 nTPM
Skin	10.2 nTPM
Skeletal muscle	10.0 nTPM
Placenta	9.7 nTPM
Breast	9.4 nTPM
Lung	6.7 nTPM
Heart muscle	6.2 nTPM
Stomach	6.0 nTPM
Prostate	5.5 nTPM

Intestinal goblet cells	8.3 nTPM
Small intestine	10.8 nTPM
Rectum	8.9 nTPM
Colon	5.0 nTPM

Macrophages	6.9 nTPM
Esophagus	14.2 nTPM
Spleen	11.4 nTPM
Bone marrow	10.0 nTPM
Lung	9.7 nTPM
Ovary	8.8 nTPM
Stomach	8.8 nTPM
Endometrium	7.9 nTPM
Adipose tissue	6.7 nTPM
Breast	6.0 nTPM
Testis	5.8 nTPM
Skeletal muscle	5.1 nTPM
Prostate	3.4 nTPM
Kidney	3.0 nTPM
Pancreas	2.5 nTPM
PBMC	0.0 nTPM

Paneth cells	9.0 nTPM
Small intestine	11.3 nTPM
Rectum	9.2 nTPM
Colon	6.5 nTPM

Plasma cells	7.7 nTPM
Spleen	14.4 nTPM
Adipose tissue	9.7 nTPM
Bone marrow	8.2 nTPM
Stomach	6.3 nTPM
Esophagus	0.0 nTPM

Respiratory ciliated cells	5.1 nTPM
Bronchus	5.8 nTPM
Lung	4.4 nTPM

Smooth muscle cells	10.8 nTPM
Bronchus	24.6 nTPM
Esophagus	21.7 nTPM
Endometrium	13.1 nTPM
Pancreas	11.1 nTPM
Adipose tissue	10.4 nTPM
Skin	8.7 nTPM
Breast	7.6 nTPM
Skeletal muscle	7.5 nTPM
Ovary	6.8 nTPM
Heart muscle	3.9 nTPM
Prostate	3.7 nTPM

T-cells	11.1 nTPM
Bone marrow	16.9 nTPM
Lymph node	16.7 nTPM
Stomach	14.7 nTPM
Spleen	14.4 nTPM
Ovary	13.4 nTPM
Esophagus	13.1 nTPM
Skin	12.4 nTPM
Adipose tissue	11.2 nTPM
Endometrium	10.9 nTPM
Breast	10.0 nTPM
Prostate	9.5 nTPM
Skeletal muscle	8.5 nTPM
Colon	8.1 nTPM
Lung	7.6 nTPM
PBMC	7.1 nTPM
Kidney	6.9 nTPM
Liver	6.8 nTPM

Basal keratinocytes	8.4 nTPM
Skin	8.4 nTPM

Basal prostatic cells	2.9 nTPM
Prostate	2.9 nTPM

Distal enterocytes	15.7 nTPM
Rectum	15.7 nTPM
Colon	15.6 nTPM

Distal tubular cells	5.9 nTPM
Kidney	5.9 nTPM

Undifferentiated cells	13.0 nTPM
Small intestine	19.7 nTPM
Colon	10.1 nTPM
Rectum	9.2 nTPM

Adipose tissue

Bone marrow

Brain

Breast

Bronchus

Colon

Endometrium

Esophagus

Eye

Heart muscle

Kidney

Liver

Lung

Lymph node

Ovary

Pancreas

Placenta

Prostate

Rectum

Skeletal muscle

Skin

Small intestine

Spleen

Stomach

Testis

PBMC