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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.7 nTPM
HPA:11.7 nTPM
GTEx:9.2 nTPM
FANTOM5:35.9 Scaled Tags Per Million
Pig:25.4 nTPM
Mouse:27.2 nTPM
Allen mouse:0.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 11.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.4
2288 Male, age 75, left hemisphere 10.8
2846 Female, age 79, unknown 10.1
1854 Male, age 80, left hemisphere 9.5
1857 Female, age 85, left hemisphere 9.5
2290 Female, age 72, unknown 9.3
2481 Female, age 94, left hemisphere 9.2
1781 Male, age 74, unknown 8.9
2289 Male, age 61, right hemisphere 7.9
Claustrum
nTPM: 10.0
2392 Female, age 94, both hemispheres 11.4
2198 Male, age 80, both hemispheres 10.8
1956 Male, age 74, unknown 10.6
2196 Female, age 79, unknown 10.3
2568 Male, age 61, both hemispheres 10.1
2292 Female, age 85, both hemispheres 10.0
2491 Male, age 75, both hemispheres 9.5
2284 Female, age 91, both hemispheres 8.7
2645 Female, age 72, unknown 8.3
Globus pallidus, externus
nTPM: 10.7
1996 Male, age 80, right hemisphere 11.8
2772 Female, age 79, unknown 11.8
2395 Male, age 75, both hemispheres 11.3
2567 Female, age 72, unknown 9.5
2646 Male, age 61, right hemisphere 8.9
Globus pallidus, internus
nTPM: 11.7
2287 Male, age 75, right hemisphere 13.4
2778 Female, age 91, both hemispheres 13.4
1818 Male, age 74, unknown 11.7
2111 Female, age 85, right hemisphere 11.6
2483 Female, age 94, right hemisphere 10.8
2037 Male, age 80, right hemisphere 10.7
2566 Female, age 72, unknown 10.6
Nucleus accumbens
nTPM: 9.8
1856 Female, age 91, right hemisphere 11.2
2391 Female, age 94, left hemisphere 10.8
2698 Female, age 72, unknown 10.8
2286 Male, age 75, left hemisphere 10.4
1806 Female, age 85, left hemisphere 9.5
1783 Male, age 74, unknown 9.1
2732 Male, age 80, right hemisphere 8.8
2824 Male, age 61, right hemisphere 8.2
Nucleus basalis of Meynert
nTPM: 9.4
2821 Male, age 75, both hemispheres 10.0
2393 Male, age 80, right hemisphere 9.5
2484 Female, age 94, left hemisphere 9.1
2569 Male, age 61, both hemispheres 8.8
Nucleus of the diagonal band
nTPM: 11.4
2775 Male, age 80, right hemisphere 12.3
1812 Female, age 91, both hemispheres 12.0
2195 Female, age 85, both hemispheres 11.8
2029 Male, age 61, right hemisphere 11.4
1979 Male, age 74, unknown 9.4
Olfactory tubercle
nTPM: 11.7
2487 Female, age 94, left hemisphere 12.5
1846 Male, age 80, right hemisphere 12.3
1998 Female, age 91, both hemispheres 11.4
2856 Male, age 75, right hemisphere 10.5
Putamen
nTPM: 9.8
1937 Female, age 91, right hemisphere 10.8
2647 Male, age 75, left hemisphere 10.1
1838 Male, age 80, right hemisphere 10.0
2482 Female, age 94, left hemisphere 10.0
1829 Male, age 74, unknown 9.5
2466 Female, age 79, unknown 9.4
2489 Female, age 72, unknown 8.9
Septal nuclei
nTPM: 10.5
1960 Male, age 74, unknown 11.3
2031 Female, age 72, unknown 11.2
2009 Female, age 91, both hemispheres 11.0
2629 Female, age 94, right hemisphere 11.0
2394 Male, age 61, left hemisphere 10.2
2199 Male, age 80, right hemisphere 9.8
2059 Female, age 85, both hemispheres 9.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.2
Samples: 246

Max nTPM: 13.2
Min nTPM: 5.3
Std nTPM: 1.0
Median nTPM: 9.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 13.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 12.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 11.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 11.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 11.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 11.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 11.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 11.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 11.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 11.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 11.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 9.2
Samples: 246

Max nTPM: 14.2
Min nTPM: 5.8
Std nTPM: 1.1
Median nTPM: 9.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 14.2
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 12.8
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 12.2
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 11.9
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 11.9
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 11.7
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 11.4
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 11.2
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 11.1
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 11.1
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 11.1
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Brain - Putamen (basal ganglia)
Average nTPM: 9.1
Samples: 205

Max nTPM: 14.1
Min nTPM: 5.9
Std nTPM: 1.1
Median nTPM: 9.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 14.1
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 13.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 12.9
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 12.4
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 12.2
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 12.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 11.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 11.4
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 11.3
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 11.2
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 11.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 29.5
FF:10164-103B2 76 years, female 29.5
Globus pallidus
Scaled Tags Per Million: 29.2
FF:10161-103A8 76 years, female 34.8
FF:10175-103C4 60 years, female 23.6
Nucleus accumbens
Scaled Tags Per Million: 35.9
FF:10037-101F1 23-56 years, mixed 35.9
Putamen
Scaled Tags Per Million: 26.5
FF:10176-103C5 60 years, female 26.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 25.4
Pig sample Sample description nTPM
Caudate
nTPM: 23.5
Samples: 4

Max nTPM: 25.2
Min nTPM: 21.7
Sample A Female 21.7
Sample B Female 24.9
Sample C Male 25.2
Sample D Male 22.1
Putamen
nTPM: 25.5
Samples: 4

Max nTPM: 27.2
Min nTPM: 23.2
Sample A Female 25.7
Sample B Female 23.2
Sample C Male 27.2
Sample D Male 25.7
Septum
nTPM: 24.3
Samples: 4

Max nTPM: 27.6
Min nTPM: 21.5
Sample A Female 27.6
Sample B Female 24.4
Sample C Male 23.7
Sample D Male 21.5
Ventral pallidum
nTPM: 24.8
Samples: 4

Max nTPM: 28.5
Min nTPM: 23.4
Sample A Female 23.5
Sample B Female 28.5
Sample C Male 23.4
Sample D Male 23.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 27.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 22.9
Samples: 4

Max nTPM: 24.6
Min nTPM: 22.1
Sample A Male 24.6
Sample B Male 22.3
Sample C Female 22.4
Sample D Female 22.1
Septum
nTPM: 27.2
Samples: 4

Max nTPM: 28.4
Min nTPM: 26.2
Sample A Male 27.7
Sample B Male 28.4
Sample C Female 26.6
Sample D Female 26.2
Ventral forebrain
nTPM: 26.0
Samples: 4

Max nTPM: 26.6
Min nTPM: 25.0
Sample A Male 26.1
Sample B Male 26.6
Sample C Female 25.0
Sample D Female 26.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
70593344 Antisense, RP_050407_04_A04, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.3
70593344 Antisense, RP_050407_04_A04, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.