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SEMA5A
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:35.4 nTPM
HPA:35.4 nTPM
GTEx:7.8 nTPM
FANTOM5:28.4 Scaled Tags Per Million
Pig:28.6 nTPM
Mouse:21.4 nTPM
Allen mouse:2.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004632
Glial cells Not detected
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 35.4
Sample id Sample description nTPM
Hippocampus
nTPM: 24.6
2148 Female, age 91, left hemisphere 43.8
1855 Male, age 76, left hemisphere 40.5
1911 Female, age 85, right hemisphere 22.4
1898 Male, age 80, left hemisphere 15.0
2621 Female, age 67, right hemisphere 14.3
2529 Female, age 94, left hemisphere 11.3
Dentate gyrus
nTPM: 28.0
1927 Female, age 91, both hemispheres 43.7
2531 Female, age 67, both hemispheres 38.3
2246 Female, age 85, both hemispheres 32.1
2010 Male, age 76, both hemispheres 26.8
2528 Male, age 74, both hemispheres 18.4
2530 Female, age 94, left hemisphere 8.9
Entorhinal gyrus
nTPM: 11.2
1938 Female, age 85, left hemisphere 16.2
1787 Male, age 76, left hemisphere 11.9
2613 Female, age 94, left hemisphere 10.6
2117 Female, age 91, right hemisphere 10.5
2764 Male, age 80, right hemisphere 10.1
2686 Male, age 75, right hemisphere 8.0
Hippocampus, CA1
nTPM: 35.4
2045 Male, age 76, both hemispheres 118.4
1873 Female, age 85, both hemispheres 33.9
2082 Female, age 91, right hemisphere 12.1
2527 Male, age 74, both hemispheres 10.1
2749 Male, age 80, left hemisphere 2.8
Hippocampus, CA2
nTPM: 12.1
1892 Male, age 76, both hemispheres 45.6
2437 Female, age 94, left hemisphere 9.8
2249 Male, age 74, both hemispheres 5.3
1963 Male, age 80, left hemisphere 4.8
2113 Female, age 91, right hemisphere 4.5
1940 Female, age 85, left hemisphere 2.4
Hippocampus, CA3
nTPM: 29.0
2620 Female, age 94, left hemisphere 58.8
1867 Male, age 76, both hemispheres 38.6
1891 Female, age 85, both hemispheres 36.6
2861 Female, age 67, both hemispheres 24.0
2137 Male, age 80, left hemisphere 9.3
2436 Male, age 74, both hemispheres 6.8
Parahippocampal cortex
nTPM: 6.6
1990 Female, age 91, right hemisphere 9.6
2692 Male, age 74, both hemispheres 8.6
2250 Female, age 67, right hemisphere 7.9
1933 Female, age 85, both hemispheres 7.8
1850 Male, age 80, both hemispheres 7.6
2018 Male, age 76, both hemispheres 6.4
2693 Female, age 94, both hemispheres 5.7
2622 Female, age 67, right hemisphere 5.1
2245 Female, age 91, both hemispheres 3.9
2532 Female, age 72, left hemisphere 2.9
Perirhinal gyrus
nTPM: 6.9
1847 Female, age 91, left hemisphere 14.3
2848 Male, age 76, right hemisphere 6.9
2521 Female, age 94, right hemisphere 5.6
1841 Female, age 85, right hemisphere 4.5
1794 Male, age 80, right hemisphere 3.3
Subiculum
nTPM: 14.5
2729 Female, age 91, right hemisphere 27.4
1977 Female, age 85, both hemispheres 26.9
1901 Male, age 80, both hemispheres 9.7
2619 Male, age 74, both hemispheres 9.4
2438 Female, age 94, left hemisphere 7.9
2042 Male, age 76, both hemispheres 5.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 7.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 7.8
Samples: 197

Max nTPM: 29.4
Min nTPM: 1.2
Std nTPM: 5.5
Median nTPM: 6.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 29.4
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 29.4
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 27.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 25.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 25.0
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 24.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 24.2
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 23.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 22.9
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 22.2
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 21.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 28.4
FF:10153-102I9 76 years, female 29.7
FF:10169-103B7 60 years, female 27.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 28.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 28.6
Samples: 4

Max nTPM: 39.4
Min nTPM: 15.0
Sample A Female 15.0
Sample B Female 27.4
Sample C Male 32.6
Sample D Male 39.4
Entorhinal cortex
nTPM: 22.5
Samples: 4

Max nTPM: 24.4
Min nTPM: 20.4
Sample A Female 24.1
Sample B Female 20.4
Sample C Male 24.4
Sample D Male 21.1
Subiculum
nTPM: 22.8
Samples: 4

Max nTPM: 28.4
Min nTPM: 17.3
Sample A Female 28.4
Sample B Female 17.5
Sample C Male 27.8
Sample D Male 17.3
Ventral hippocampus
nTPM: 21.9
Samples: 4

Max nTPM: 28.5
Min nTPM: 13.9
Sample A Female 13.9
Sample B Female 28.5
Sample C Male 28.3
Sample D Male 16.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 21.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.7
Samples: 4

Max nTPM: 11.7
Min nTPM: 5.1
Sample A Male 9.7
Sample B Male 5.1
Sample C Female 11.7
Sample D Female 8.1
Hippocampal formation
nTPM: 21.4
Samples: 4

Max nTPM: 31.7
Min nTPM: 11.9
Sample A Male 11.9
Sample B Male 26.5
Sample C Female 31.7
Sample D Female 15.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.6
77932136 Antisense, RP_070219_02_C06, Mouse strain C57BL/6J (56 days, male) 7.2
80516967 Antisense, RP_070219_02_C06, Mouse strain C57BL/6J (56 days, male) 4.3
951 Antisense, RP_Baylor_253969, Mouse strain C57BL/6J (56 days, male) 0.5
950 Antisense, RP_Baylor_253969, Mouse strain C57BL/6J (56 days, male) 0.5
952 Sense, RPS_Baylor_37136, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.