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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:33.6 nTPM
HPA:33.6 nTPM
GTEx:37.7 nTPM
FANTOM5:79.3 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA029456
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 33.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.5
1857 Female, age 85, left hemisphere 34.9
2290 Female, age 72, unknown 34.7
1854 Male, age 80, left hemisphere 33.9
2846 Female, age 79, unknown 33.1
2481 Female, age 94, left hemisphere 32.9
1781 Male, age 74, unknown 31.2
2289 Male, age 61, right hemisphere 30.6
2288 Male, age 75, left hemisphere 28.9
Claustrum
nTPM: 29.2
2196 Female, age 79, unknown 30.7
2645 Female, age 72, unknown 29.8
1956 Male, age 74, unknown 29.6
2491 Male, age 75, both hemispheres 29.4
2198 Male, age 80, both hemispheres 29.3
2292 Female, age 85, both hemispheres 29.1
2568 Male, age 61, both hemispheres 28.5
2392 Female, age 94, both hemispheres 28.4
2284 Female, age 91, both hemispheres 28.3
Globus pallidus, externus
nTPM: 32.5
2646 Male, age 61, right hemisphere 35.6
1996 Male, age 80, right hemisphere 33.5
2567 Female, age 72, unknown 31.4
2772 Female, age 79, unknown 31.4
2395 Male, age 75, both hemispheres 30.9
Globus pallidus, internus
nTPM: 31.3
2483 Female, age 94, right hemisphere 34.1
2037 Male, age 80, right hemisphere 31.8
1818 Male, age 74, unknown 31.5
2287 Male, age 75, right hemisphere 30.8
2566 Female, age 72, unknown 30.8
2111 Female, age 85, right hemisphere 30.2
2778 Female, age 91, both hemispheres 30.0
Nucleus accumbens
nTPM: 31.4
1806 Female, age 85, left hemisphere 33.6
2732 Male, age 80, right hemisphere 32.6
2698 Female, age 72, unknown 32.4
1783 Male, age 74, unknown 31.8
1856 Female, age 91, right hemisphere 31.2
2824 Male, age 61, right hemisphere 30.5
2286 Male, age 75, left hemisphere 30.4
2391 Female, age 94, left hemisphere 28.8
Nucleus basalis of Meynert
nTPM: 33.6
2569 Male, age 61, both hemispheres 39.2
2484 Female, age 94, left hemisphere 32.4
2393 Male, age 80, right hemisphere 31.8
2821 Male, age 75, both hemispheres 30.9
Nucleus of the diagonal band
nTPM: 31.1
2195 Female, age 85, both hemispheres 33.6
2775 Male, age 80, right hemisphere 31.4
1979 Male, age 74, unknown 30.7
1812 Female, age 91, both hemispheres 30.4
2029 Male, age 61, right hemisphere 29.5
Olfactory tubercle
nTPM: 31.1
1846 Male, age 80, right hemisphere 33.6
2487 Female, age 94, left hemisphere 30.7
2856 Male, age 75, right hemisphere 30.3
1998 Female, age 91, both hemispheres 29.8
Putamen
nTPM: 32.4
2489 Female, age 72, unknown 35.4
2482 Female, age 94, left hemisphere 34.0
2647 Male, age 75, left hemisphere 32.2
2466 Female, age 79, unknown 32.1
1838 Male, age 80, right hemisphere 31.9
1829 Male, age 74, unknown 31.0
1937 Female, age 91, right hemisphere 30.5
Septal nuclei
nTPM: 31.8
2059 Female, age 85, both hemispheres 35.0
1960 Male, age 74, unknown 33.4
2199 Male, age 80, right hemisphere 31.9
2394 Male, age 61, left hemisphere 31.1
2629 Female, age 94, right hemisphere 30.6
2031 Female, age 72, unknown 30.4
2009 Female, age 91, both hemispheres 30.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 37.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 36.8
Samples: 246

Max nTPM: 68.6
Min nTPM: 19.4
Std nTPM: 8.0
Median nTPM: 35.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 68.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 64.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 64.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 62.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 56.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 56.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 55.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 54.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 54.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 53.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 52.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 37.7
Samples: 246

Max nTPM: 82.0
Min nTPM: 20.1
Std nTPM: 10.5
Median nTPM: 34.6
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 82.0
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 79.2
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 78.0
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 70.8
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 70.6
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 65.5
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 65.2
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 62.3
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 61.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 59.4
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 59.3
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Brain - Putamen (basal ganglia)
Average nTPM: 36.8
Samples: 205

Max nTPM: 96.3
Min nTPM: 21.5
Std nTPM: 9.7
Median nTPM: 34.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 96.3
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 71.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 69.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 69.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 66.4
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 66.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 61.2
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 61.1
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 59.5
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 57.3
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 55.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 79.3
FF:10164-103B2 76 years, female 79.3
Globus pallidus
Scaled Tags Per Million: 64.4
FF:10161-103A8 76 years, female 71.3
FF:10175-103C4 60 years, female 57.6
Nucleus accumbens
Scaled Tags Per Million: 67.9
FF:10037-101F1 23-56 years, mixed 67.9
Putamen
Scaled Tags Per Million: 67.7
FF:10176-103C5 60 years, female 67.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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