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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.1 nTPM
HPA:37.1 nTPM
GTEx:30.9 nTPM
FANTOM5:51.5 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.1
2586 Male, age 75, left hemisphere 36.6
2828 Female, age 72, unknown 34.5
2666 Male, age 74, left hemisphere 32.0
1870 Female, age 42, unknown 31.2
1827 Male, age 72, unknown 31.0
1833 Male, age 53, unknown 29.9
2411 Female, age 72, unknown 29.7
1830 Male, age 51, unknown 29.6
2019 Male, age 18, unknown 28.6
2219 Male, age 76, both hemispheres 27.7
Dorsal raphe nucleus
nTPM: 31.4
2016 Female, age 72, unknown 32.1
1828 Male, age 53, unknown 32.0
2298 Female, age 72, unknown 31.9
2047 Male, age 72, unknown 30.7
2750 Male, age 76, both hemispheres 30.4
Inferior colliculus
nTPM: 31.9
1890 Male, age 53, unknown 33.7
2097 Female, age 72, unknown 32.3
2849 Male, age 72, unknown 31.2
1848 Female, age 42, unknown 30.2
Median raphe nucleus
nTPM: 31.1
2220 Male, age 76, midline 31.1
Pedunculopontine tegmental nucleus
nTPM: 30.2
2338 Male, age 61, both hemispheres 32.1
2334 Male, age 80, both hemispheres 30.1
1921 Female, age 85, both hemispheres 28.6
Periaquaductal grey, anterior
nTPM: 37.1
1947 Male, age 18, unknown 40.2
1795 Male, age 51, unknown 35.7
2502 Female, age 75, unknown 35.2
Periaquaductal grey, dorsal
nTPM: 33.0
2850 Male, age 76, both hemispheres 35.0
1831 Male, age 72, unknown 33.1
1840 Male, age 53, unknown 32.9
2464 Female, age 72, unknown 31.0
Periaquaductal grey, lateral
nTPM: 32.8
2140 Male, age 76, both hemispheres 34.6
2053 Male, age 18, unknown 32.6
2272 Male, age 74, both hemispheres 31.2
Pretectal area
nTPM: 31.6
1944 Female, age 72, unknown 33.4
1815 Male, age 53, unknown 32.7
1817 Female, age 42, unknown 32.7
1816 Male, age 51, unknown 32.6
2825 Male, age 18, unknown 31.5
2273 Male, age 74, both hemispheres 31.4
2667 Female, age 75, unknown 31.1
2007 Male, age 72, unknown 30.9
2224 Female, age 72, unknown 30.6
2316 Male, age 76, right hemisphere 30.6
2407 Male, age 75, both hemispheres 30.6
Red nucleus
nTPM: 32.3
1904 Male, age 53, unknown 33.5
1954 Female, age 42, unknown 33.1
1865 Male, age 51, unknown 33.0
2503 Female, age 72, unknown 32.9
2227 Male, age 72, unknown 32.8
2769 Male, age 72, unknown 32.8
1821 Female, age 72, unknown 32.5
2725 Female, age 75, unknown 32.5
2584 Male, age 75, left hemisphere 32.1
2588 Male, age 74, left hemisphere 31.8
2823 Male, age 76, right hemisphere 30.5
2785 Male, age 18, unknown 30.0
Substantia nigra
nTPM: 31.9
2665 Male, age 74, both hemispheres 34.8
2583 Male, age 75, right hemisphere 33.4
2590 Female, age 75, unknown 33.2
1851 Male, age 51, unknown 32.8
2699 Male, age 18, unknown 32.0
2409 Female, age 72, unknown 31.4
1889 Female, age 72, unknown 31.3
1916 Female, age 42, unknown 31.0
2241 Male, age 72, unknown 30.7
1941 Male, age 53, unknown 28.6
Superior colliculus
nTPM: 32.6
2261 Male, age 18, unknown 35.9
1995 Male, age 72, unknown 34.5
2664 Male, age 75, both hemispheres 33.9
1913 Female, age 42, unknown 33.1
2668 Female, age 75, unknown 32.8
1796 Male, age 53, unknown 32.7
2087 Female, age 72, unknown 32.5
2587 Male, age 74, left hemisphere 31.9
1839 Male, age 51, unknown 30.6
1895 Male, age 76, right hemisphere 28.3
Ventral tegmental area
nTPM: 32.0
1942 Male, age 51, unknown 33.7
2021 Male, age 53, unknown 31.9
2223 Female, age 72, unknown 31.8
1915 Female, age 42, unknown 31.6
2218 Male, age 76, both hemispheres 31.6
2410 Female, age 72, unknown 31.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.9
Samples: 139

Max nTPM: 61.6
Min nTPM: 12.0
Std nTPM: 8.8
Median nTPM: 29.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 61.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 60.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 55.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 53.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 49.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 46.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 46.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 45.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 45.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 45.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 44.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.5
FF:10158-103A5 76 years, female 51.5

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The Human Protein Atlas

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