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PFDN1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:77.2 nTPM
HPA:77.2 nTPM
GTEx:77.6 nTPM
FANTOM5:108.5 Scaled Tags Per Million
Pig:23.7 nTPM
Mouse:73.2 nTPM
Allen mouse:1.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA006499
Glial cells Medium
Neuronal cells High


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 77.2
Sample id Sample description nTPM
Hippocampus
nTPM: 74.7
1898 Male, age 80, left hemisphere 79.4
1855 Male, age 76, left hemisphere 75.7
2621 Female, age 67, right hemisphere 75.7
2148 Female, age 91, left hemisphere 74.3
2529 Female, age 94, left hemisphere 72.3
1911 Female, age 85, right hemisphere 70.9
Dentate gyrus
nTPM: 73.5
1927 Female, age 91, both hemispheres 76.1
2010 Male, age 76, both hemispheres 75.2
2528 Male, age 74, both hemispheres 74.2
2530 Female, age 94, left hemisphere 73.4
2246 Female, age 85, both hemispheres 73.2
2531 Female, age 67, both hemispheres 68.9
Entorhinal gyrus
nTPM: 73.0
2764 Male, age 80, right hemisphere 76.3
1938 Female, age 85, left hemisphere 73.6
1787 Male, age 76, left hemisphere 73.3
2117 Female, age 91, right hemisphere 73.0
2686 Male, age 75, right hemisphere 72.2
2613 Female, age 94, left hemisphere 69.8
Hippocampus, CA1
nTPM: 75.1
2749 Male, age 80, left hemisphere 83.4
2527 Male, age 74, both hemispheres 75.0
1873 Female, age 85, both hemispheres 73.3
2082 Female, age 91, right hemisphere 72.3
2045 Male, age 76, both hemispheres 71.5
Hippocampus, CA2
nTPM: 74.5
1963 Male, age 80, left hemisphere 78.8
1892 Male, age 76, both hemispheres 78.0
2249 Male, age 74, both hemispheres 75.4
2437 Female, age 94, left hemisphere 73.6
1940 Female, age 85, left hemisphere 71.4
2113 Female, age 91, right hemisphere 69.6
Hippocampus, CA3
nTPM: 74.1
2137 Male, age 80, left hemisphere 77.7
2436 Male, age 74, both hemispheres 75.8
1867 Male, age 76, both hemispheres 75.6
2620 Female, age 94, left hemisphere 73.9
1891 Female, age 85, both hemispheres 73.7
2861 Female, age 67, both hemispheres 68.0
Parahippocampal cortex
nTPM: 73.6
1850 Male, age 80, both hemispheres 78.1
2532 Female, age 72, left hemisphere 75.3
2692 Male, age 74, both hemispheres 74.9
1990 Female, age 91, right hemisphere 74.5
2018 Male, age 76, both hemispheres 74.2
1933 Female, age 85, both hemispheres 72.8
2250 Female, age 67, right hemisphere 72.4
2245 Female, age 91, both hemispheres 71.9
2693 Female, age 94, both hemispheres 71.9
2622 Female, age 67, right hemisphere 70.0
Perirhinal gyrus
nTPM: 77.2
1847 Female, age 91, left hemisphere 80.7
1794 Male, age 80, right hemisphere 77.8
1841 Female, age 85, right hemisphere 77.6
2521 Female, age 94, right hemisphere 77.4
2848 Male, age 76, right hemisphere 72.5
Subiculum
nTPM: 72.2
1977 Female, age 85, both hemispheres 74.2
1901 Male, age 80, both hemispheres 74.0
2619 Male, age 74, both hemispheres 74.0
2042 Male, age 76, both hemispheres 73.1
2729 Female, age 91, right hemisphere 69.4
2438 Female, age 94, left hemisphere 68.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 77.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 77.6
Samples: 197

Max nTPM: 156.2
Min nTPM: 41.3
Std nTPM: 18.1
Median nTPM: 74.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 156.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 141.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 131.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 121.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 120.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 119.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 112.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 110.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 110.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 108.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 108.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 108.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 108.5
FF:10169-103B7 60 years, female 122.4
FF:10153-102I9 76 years, female 94.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 23.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 23.2
Samples: 4

Max nTPM: 30.1
Min nTPM: 16.0
Sample A Female 30.1
Sample B Female 20.5
Sample C Male 26.1
Sample D Male 16.0
Entorhinal cortex
nTPM: 23.7
Samples: 4

Max nTPM: 25.8
Min nTPM: 19.7
Sample A Female 24.3
Sample B Female 25.8
Sample C Male 24.8
Sample D Male 19.7
Subiculum
nTPM: 21.7
Samples: 4

Max nTPM: 31.3
Min nTPM: 17.6
Sample A Female 31.3
Sample B Female 20.2
Sample C Male 17.6
Sample D Male 17.8
Ventral hippocampus
nTPM: 19.7
Samples: 4

Max nTPM: 22.4
Min nTPM: 17.3
Sample A Female 22.4
Sample B Female 17.3
Sample C Male 19.6
Sample D Male 19.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 73.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 73.2
Samples: 4

Max nTPM: 79.5
Min nTPM: 67.7
Sample A Male 70.1
Sample B Male 79.5
Sample C Female 75.5
Sample D Female 67.7
Hippocampal formation
nTPM: 71.3
Samples: 4

Max nTPM: 83.3
Min nTPM: 62.7
Sample A Male 83.3
Sample B Male 68.7
Sample C Female 62.7
Sample D Female 70.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.2
68632057 Antisense, RP_050125_01_F04, Mouse strain C57BL/6J (56 days, male) 1.2

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