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PFDN1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.2 nTPM
HPA:77.2 nTPM
GTEx:77.8 nTPM
FANTOM5:92.0 Scaled Tags Per Million
Pig:28.0 nTPM
Mouse:77.1 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.2
2019 Male, age 18, unknown 77.2
2411 Female, age 72, unknown 75.7
1833 Male, age 53, unknown 75.4
2586 Male, age 75, left hemisphere 75.0
1870 Female, age 42, unknown 74.8
2666 Male, age 74, left hemisphere 74.2
1830 Male, age 51, unknown 73.8
1827 Male, age 72, unknown 73.6
2219 Male, age 76, both hemispheres 71.7
2828 Female, age 72, unknown 70.8
Dorsal raphe nucleus
nTPM: 75.1
1828 Male, age 53, unknown 77.1
2047 Male, age 72, unknown 77.0
2298 Female, age 72, unknown 75.0
2750 Male, age 76, both hemispheres 74.8
2016 Female, age 72, unknown 71.8
Inferior colliculus
nTPM: 74.6
1848 Female, age 42, unknown 76.2
2097 Female, age 72, unknown 75.2
1890 Male, age 53, unknown 74.1
2849 Male, age 72, unknown 72.8
Median raphe nucleus
nTPM: 73.9
2220 Male, age 76, midline 73.9
Pedunculopontine tegmental nucleus
nTPM: 74.6
2338 Male, age 61, both hemispheres 76.1
2334 Male, age 80, both hemispheres 75.8
1921 Female, age 85, both hemispheres 72.0
Periaquaductal grey, anterior
nTPM: 72.6
1947 Male, age 18, unknown 73.6
1795 Male, age 51, unknown 72.5
2502 Female, age 75, unknown 71.7
Periaquaductal grey, dorsal
nTPM: 70.9
2464 Female, age 72, unknown 72.0
2850 Male, age 76, both hemispheres 71.6
1840 Male, age 53, unknown 70.6
1831 Male, age 72, unknown 69.2
Periaquaductal grey, lateral
nTPM: 70.3
2053 Male, age 18, unknown 71.6
2140 Male, age 76, both hemispheres 69.7
2272 Male, age 74, both hemispheres 69.7
Pretectal area
nTPM: 74.4
1817 Female, age 42, unknown 80.4
2007 Male, age 72, unknown 78.6
1944 Female, age 72, unknown 77.6
1816 Male, age 51, unknown 77.0
1815 Male, age 53, unknown 75.2
2667 Female, age 75, unknown 73.5
2273 Male, age 74, both hemispheres 71.8
2825 Male, age 18, unknown 71.8
2224 Female, age 72, unknown 71.1
2407 Male, age 75, both hemispheres 71.1
2316 Male, age 76, right hemisphere 70.1
Red nucleus
nTPM: 75.4
1821 Female, age 72, unknown 83.7
2227 Male, age 72, unknown 77.4
1865 Male, age 51, unknown 76.7
1954 Female, age 42, unknown 76.5
2769 Male, age 72, unknown 76.0
2785 Male, age 18, unknown 75.7
2725 Female, age 75, unknown 75.3
1904 Male, age 53, unknown 74.0
2823 Male, age 76, right hemisphere 73.9
2503 Female, age 72, unknown 73.6
2588 Male, age 74, left hemisphere 72.7
2584 Male, age 75, left hemisphere 69.9
Substantia nigra
nTPM: 77.2
1916 Female, age 42, unknown 81.8
1889 Female, age 72, unknown 80.8
1851 Male, age 51, unknown 79.2
1941 Male, age 53, unknown 78.5
2409 Female, age 72, unknown 77.4
2583 Male, age 75, right hemisphere 76.7
2241 Male, age 72, unknown 75.3
2590 Female, age 75, unknown 74.6
2665 Male, age 74, both hemispheres 74.1
2699 Male, age 18, unknown 74.0
Superior colliculus
nTPM: 73.8
2668 Female, age 75, unknown 77.9
1895 Male, age 76, right hemisphere 77.3
2087 Female, age 72, unknown 74.0
2664 Male, age 75, both hemispheres 73.9
2587 Male, age 74, left hemisphere 73.8
2261 Male, age 18, unknown 73.2
1796 Male, age 53, unknown 72.9
1913 Female, age 42, unknown 72.2
1839 Male, age 51, unknown 71.5
1995 Male, age 72, unknown 71.2
Ventral tegmental area
nTPM: 76.0
2410 Female, age 72, unknown 82.4
2218 Male, age 76, both hemispheres 76.3
1915 Female, age 42, unknown 76.2
2223 Female, age 72, unknown 75.1
2021 Male, age 53, unknown 73.1
1942 Male, age 51, unknown 72.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 77.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.8
Samples: 139

Max nTPM: 144.5
Min nTPM: 47.4
Std nTPM: 15.0
Median nTPM: 76.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 144.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 125.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 121.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 115.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 111.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 111.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 110.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 106.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 103.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 100.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 100.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.0
FF:10158-103A5 76 years, female 92.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.0
Pig sample Sample description nTPM
Midbrain
nTPM: 27.7
Samples: 4

Max nTPM: 32.3
Min nTPM: 22.8
Sample A Female 32.3
Sample B Female 28.5
Sample C Male 27.2
Sample D Male 22.8
Periaqueductal gray
nTPM: 23.0
Samples: 3

Max nTPM: 24.8
Min nTPM: 20.9
Sample B Female 23.2
Sample C Male 24.8
Sample D Male 20.9
Substantia nigra
nTPM: 26.2
Samples: 4

Max nTPM: 38.7
Min nTPM: 18.4
Sample A Female 38.7
Sample B Female 21.6
Sample C Male 26.0
Sample D Male 18.4
Superior colliculi
nTPM: 28.1
Samples: 4

Max nTPM: 37.8
Min nTPM: 18.7
Sample A Female 37.8
Sample B Female 18.7
Sample C Male 29.8
Sample D Male 25.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 77.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 77.1
Samples: 4

Max nTPM: 80.6
Min nTPM: 72.6
Sample A Male 79.9
Sample B Male 72.6
Sample C Female 75.2
Sample D Female 80.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68632057 Antisense, RP_050125_01_F04, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.