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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:362.9 nTPM
HPA:362.9 nTPM
GTEx:267.7 nTPM
FANTOM5:1109.7 Scaled Tags Per Million
Pig:782.4 nTPM
Mouse:356.8 nTPM
Allen mouse:5.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA002989Antibody HPA003020Antibody CAB002306
Glial cells LowMediumMedium
Neuronal cells LowNot detectedHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 362.9
Sample id Sample description nTPM
Hippocampus
nTPM: 362.9
2529 Female, age 94, left hemisphere 437.8
1855 Male, age 76, left hemisphere 426.2
2148 Female, age 91, left hemisphere 346.6
1898 Male, age 80, left hemisphere 343.5
2621 Female, age 67, right hemisphere 311.9
1911 Female, age 85, right hemisphere 311.3
Dentate gyrus
nTPM: 345.1
2528 Male, age 74, both hemispheres 540.8
2530 Female, age 94, left hemisphere 395.1
2010 Male, age 76, both hemispheres 388.0
2246 Female, age 85, both hemispheres 296.7
2531 Female, age 67, both hemispheres 289.0
1927 Female, age 91, both hemispheres 160.8
Entorhinal gyrus
nTPM: 163.5
2117 Female, age 91, right hemisphere 257.8
1787 Male, age 76, left hemisphere 191.9
1938 Female, age 85, left hemisphere 146.7
2764 Male, age 80, right hemisphere 138.3
2613 Female, age 94, left hemisphere 129.2
2686 Male, age 75, right hemisphere 117.3
Hippocampus, CA1
nTPM: 326.1
2082 Female, age 91, right hemisphere 448.0
2045 Male, age 76, both hemispheres 386.0
1873 Female, age 85, both hemispheres 357.1
2527 Male, age 74, both hemispheres 342.7
2749 Male, age 80, left hemisphere 97.0
Hippocampus, CA2
nTPM: 286.9
2249 Male, age 74, both hemispheres 583.7
2113 Female, age 91, right hemisphere 391.9
2437 Female, age 94, left hemisphere 230.4
1963 Male, age 80, left hemisphere 188.8
1940 Female, age 85, left hemisphere 179.5
1892 Male, age 76, both hemispheres 147.1
Hippocampus, CA3
nTPM: 296.8
2620 Female, age 94, left hemisphere 491.1
2436 Male, age 74, both hemispheres 380.5
2861 Female, age 67, both hemispheres 297.4
1891 Female, age 85, both hemispheres 268.7
1867 Male, age 76, both hemispheres 210.9
2137 Male, age 80, left hemisphere 132.5
Parahippocampal cortex
nTPM: 162.9
2018 Male, age 76, both hemispheres 317.1
2250 Female, age 67, right hemisphere 270.9
2245 Female, age 91, both hemispheres 191.1
1933 Female, age 85, both hemispheres 158.3
2692 Male, age 74, both hemispheres 144.8
1990 Female, age 91, right hemisphere 140.8
1850 Male, age 80, both hemispheres 125.6
2532 Female, age 72, left hemisphere 101.9
2693 Female, age 94, both hemispheres 98.0
2622 Female, age 67, right hemisphere 80.4
Perirhinal gyrus
nTPM: 145.0
1847 Female, age 91, left hemisphere 203.5
2521 Female, age 94, right hemisphere 195.5
1841 Female, age 85, right hemisphere 113.1
1794 Male, age 80, right hemisphere 113.0
2848 Male, age 76, right hemisphere 100.1
Subiculum
nTPM: 275.2
2729 Female, age 91, right hemisphere 487.4
2042 Male, age 76, both hemispheres 352.4
2619 Male, age 74, both hemispheres 289.7
1901 Male, age 80, both hemispheres 200.6
1977 Female, age 85, both hemispheres 179.6
2438 Female, age 94, left hemisphere 141.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 267.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 267.7
Samples: 197

Max nTPM: 1876.9
Min nTPM: 46.3
Std nTPM: 170.9
Median nTPM: 232.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 1876.9
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 802.5
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 760.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 690.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 644.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 584.4
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 572.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 543.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 532.2
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 507.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 507.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 1109.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1109.7
FF:10153-102I9 76 years, female 1346.8
FF:10169-103B7 60 years, female 872.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 782.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 733.5
Samples: 4

Max nTPM: 993.3
Min nTPM: 553.5
Sample A Female 799.1
Sample B Female 587.9
Sample C Male 993.3
Sample D Male 553.5
Entorhinal cortex
nTPM: 675.6
Samples: 4

Max nTPM: 797.9
Min nTPM: 556.6
Sample A Female 797.9
Sample B Female 556.6
Sample C Male 766.8
Sample D Male 580.9
Subiculum
nTPM: 683.6
Samples: 4

Max nTPM: 1032.9
Min nTPM: 549.4
Sample A Female 1032.9
Sample B Female 575.7
Sample C Male 576.5
Sample D Male 549.4
Ventral hippocampus
nTPM: 782.4
Samples: 4

Max nTPM: 1015.4
Min nTPM: 657.3
Sample A Female 717.0
Sample B Female 657.3
Sample C Male 1015.4
Sample D Male 739.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 356.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 311.4
Samples: 4

Max nTPM: 428.4
Min nTPM: 224.0
Sample A Male 265.0
Sample B Male 224.0
Sample C Female 428.4
Sample D Female 328.3
Hippocampal formation
nTPM: 356.8
Samples: 4

Max nTPM: 408.1
Min nTPM: 302.3
Sample A Male 391.0
Sample B Male 302.3
Sample C Female 325.8
Sample D Female 408.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.6
73788443 Antisense, RP_051213_01_B02, Mouse strain C57BL/6J (56 days, male) 6.5
70429441 Antisense, RP_050614_01_F09, Mouse strain C57BL/6J (56 days, male) 5.5
73512200 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 4.6
70918880 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.