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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1251.5 nTPM
HPA:1251.5 nTPM
GTEx:924.2 nTPM
FANTOM5:2288.7 Scaled Tags Per Million
Pig:1056.4 nTPM
Mouse:1586.8 nTPM
Allen mouse:9.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1251.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 823.2
2828 Female, age 72, unknown 1269.7
1870 Female, age 42, unknown 1050.7
1827 Male, age 72, unknown 904.2
2411 Female, age 72, unknown 844.4
1833 Male, age 53, unknown 825.3
2666 Male, age 74, left hemisphere 809.8
1830 Male, age 51, unknown 786.1
2219 Male, age 76, both hemispheres 731.2
2586 Male, age 75, left hemisphere 719.5
2019 Male, age 18, unknown 290.9
Dorsal raphe nucleus
nTPM: 1117.1
2016 Female, age 72, unknown 1347.1
2298 Female, age 72, unknown 1148.0
2047 Male, age 72, unknown 1145.1
1828 Male, age 53, unknown 1091.1
2750 Male, age 76, both hemispheres 854.1
Inferior colliculus
nTPM: 817.1
2849 Male, age 72, unknown 1116.2
2097 Female, age 72, unknown 843.4
1890 Male, age 53, unknown 804.1
1848 Female, age 42, unknown 504.8
Median raphe nucleus
nTPM: 1022.3
2220 Male, age 76, midline 1022.3
Pedunculopontine tegmental nucleus
nTPM: 991.9
2334 Male, age 80, both hemispheres 1128.8
1921 Female, age 85, both hemispheres 1057.8
2338 Male, age 61, both hemispheres 789.0
Periaquaductal grey, anterior
nTPM: 1070.9
1795 Male, age 51, unknown 1272.7
1947 Male, age 18, unknown 1099.3
2502 Female, age 75, unknown 840.6
Periaquaductal grey, dorsal
nTPM: 1052.8
1840 Male, age 53, unknown 1180.5
2850 Male, age 76, both hemispheres 1175.4
2464 Female, age 72, unknown 1092.5
1831 Male, age 72, unknown 762.7
Periaquaductal grey, lateral
nTPM: 1251.5
2053 Male, age 18, unknown 1737.7
2140 Male, age 76, both hemispheres 1027.1
2272 Male, age 74, both hemispheres 989.7
Pretectal area
nTPM: 800.6
2825 Male, age 18, unknown 1601.4
2224 Female, age 72, unknown 1281.9
2407 Male, age 75, both hemispheres 1082.0
2667 Female, age 75, unknown 1060.0
2273 Male, age 74, both hemispheres 1002.8
2316 Male, age 76, right hemisphere 612.7
1944 Female, age 72, unknown 569.3
1815 Male, age 53, unknown 496.4
1817 Female, age 42, unknown 406.4
1816 Male, age 51, unknown 381.8
2007 Male, age 72, unknown 311.5
Red nucleus
nTPM: 883.6
2769 Male, age 72, unknown 1239.5
2227 Male, age 72, unknown 1218.3
2503 Female, age 72, unknown 1138.2
2725 Female, age 75, unknown 996.2
1821 Female, age 72, unknown 956.0
1865 Male, age 51, unknown 950.6
1954 Female, age 42, unknown 937.4
1904 Male, age 53, unknown 793.2
2584 Male, age 75, left hemisphere 753.7
2588 Male, age 74, left hemisphere 673.9
2823 Male, age 76, right hemisphere 652.0
2785 Male, age 18, unknown 294.1
Substantia nigra
nTPM: 960.9
2699 Male, age 18, unknown 1936.5
1916 Female, age 42, unknown 1217.0
1851 Male, age 51, unknown 1078.9
2665 Male, age 74, both hemispheres 1021.9
2590 Female, age 75, unknown 829.0
1941 Male, age 53, unknown 791.3
2409 Female, age 72, unknown 754.2
2583 Male, age 75, right hemisphere 732.1
2241 Male, age 72, unknown 659.4
1889 Female, age 72, unknown 589.0
Superior colliculus
nTPM: 635.8
1796 Male, age 53, unknown 809.7
1913 Female, age 42, unknown 770.9
2587 Male, age 74, left hemisphere 719.0
1995 Male, age 72, unknown 704.5
1839 Male, age 51, unknown 678.1
2261 Male, age 18, unknown 660.7
2664 Male, age 75, both hemispheres 600.3
2087 Female, age 72, unknown 558.9
2668 Female, age 75, unknown 469.0
1895 Male, age 76, right hemisphere 386.7
Ventral tegmental area
nTPM: 1015.9
1915 Female, age 42, unknown 1169.6
2021 Male, age 53, unknown 1074.3
1942 Male, age 51, unknown 1027.3
2218 Male, age 76, both hemispheres 954.3
2410 Female, age 72, unknown 951.3
2223 Female, age 72, unknown 918.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 924.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 924.2
Samples: 139

Max nTPM: 2815.6
Min nTPM: 135.4
Std nTPM: 435.4
Median nTPM: 811.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 2815.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2400.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 2252.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 2043.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1981.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1786.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1712.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 1709.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 1683.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1656.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 1635.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2288.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2288.7
FF:10158-103A5 76 years, female 2288.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 1056.4
Pig sample Sample description nTPM
Midbrain
nTPM: 642.6
Samples: 4

Max nTPM: 855.6
Min nTPM: 537.4
Sample A Female 537.4
Sample B Female 855.6
Sample C Male 590.6
Sample D Male 586.9
Periaqueductal gray
nTPM: 688.3
Samples: 3

Max nTPM: 823.7
Min nTPM: 570.5
Sample B Female 670.8
Sample C Male 823.7
Sample D Male 570.5
Substantia nigra
nTPM: 1056.4
Samples: 4

Max nTPM: 1264.7
Min nTPM: 928.0
Sample A Female 928.0
Sample B Female 1043.3
Sample C Male 989.4
Sample D Male 1264.7
Superior colliculi
nTPM: 662.9
Samples: 4

Max nTPM: 908.1
Min nTPM: 549.3
Sample A Female 908.1
Sample B Female 549.3
Sample C Male 559.4
Sample D Male 634.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1586.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 1586.8
Samples: 4

Max nTPM: 1661.9
Min nTPM: 1487.9
Sample A Male 1661.9
Sample B Male 1487.9
Sample C Female 1545.5
Sample D Female 1651.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.3
73788443 Antisense, RP_051213_01_B02, Mouse strain C57BL/6J (56 days, male) 10.0
73512200 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 8.9
70429441 Antisense, RP_050614_01_F09, Mouse strain C57BL/6J (56 days, male) 8.8
70918880 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 3.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.