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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.7 nTPM
HPA:53.7 nTPM
GTEx:68.5 nTPM
FANTOM5:74.1 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:112.5 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.5
1870 Female, age 42, unknown 53.0
2828 Female, age 72, unknown 52.7
1827 Male, age 72, unknown 52.1
1830 Male, age 51, unknown 51.9
2019 Male, age 18, unknown 51.9
2411 Female, age 72, unknown 51.8
2586 Male, age 75, left hemisphere 50.7
2666 Male, age 74, left hemisphere 50.6
1833 Male, age 53, unknown 50.4
2219 Male, age 76, both hemispheres 50.4
Dorsal raphe nucleus
nTPM: 53.0
2298 Female, age 72, unknown 55.4
1828 Male, age 53, unknown 53.6
2016 Female, age 72, unknown 53.5
2047 Male, age 72, unknown 51.2
2750 Male, age 76, both hemispheres 51.2
Inferior colliculus
nTPM: 52.2
2097 Female, age 72, unknown 55.0
1890 Male, age 53, unknown 52.3
1848 Female, age 42, unknown 51.9
2849 Male, age 72, unknown 49.7
Median raphe nucleus
nTPM: 52.3
2220 Male, age 76, midline 52.3
Pedunculopontine tegmental nucleus
nTPM: 52.9
2334 Male, age 80, both hemispheres 54.5
1921 Female, age 85, both hemispheres 53.0
2338 Male, age 61, both hemispheres 51.2
Periaquaductal grey, anterior
nTPM: 52.9
2502 Female, age 75, unknown 54.3
1947 Male, age 18, unknown 52.9
1795 Male, age 51, unknown 51.5
Periaquaductal grey, dorsal
nTPM: 52.3
2464 Female, age 72, unknown 52.5
2850 Male, age 76, both hemispheres 52.3
1831 Male, age 72, unknown 52.2
1840 Male, age 53, unknown 52.1
Periaquaductal grey, lateral
nTPM: 51.6
2053 Male, age 18, unknown 53.8
2272 Male, age 74, both hemispheres 50.7
2140 Male, age 76, both hemispheres 50.3
Pretectal area
nTPM: 52.1
1944 Female, age 72, unknown 53.5
2316 Male, age 76, right hemisphere 52.9
2667 Female, age 75, unknown 52.8
1816 Male, age 51, unknown 52.7
1817 Female, age 42, unknown 52.3
2273 Male, age 74, both hemispheres 52.2
1815 Male, age 53, unknown 52.1
2224 Female, age 72, unknown 52.0
2007 Male, age 72, unknown 51.4
2825 Male, age 18, unknown 50.9
2407 Male, age 75, both hemispheres 50.4
Red nucleus
nTPM: 52.9
1821 Female, age 72, unknown 55.8
1954 Female, age 42, unknown 55.0
1904 Male, age 53, unknown 54.0
2503 Female, age 72, unknown 53.3
2725 Female, age 75, unknown 53.2
1865 Male, age 51, unknown 53.1
2227 Male, age 72, unknown 53.1
2823 Male, age 76, right hemisphere 52.4
2769 Male, age 72, unknown 51.9
2785 Male, age 18, unknown 51.2
2584 Male, age 75, left hemisphere 51.1
2588 Male, age 74, left hemisphere 50.8
Substantia nigra
nTPM: 53.7
1916 Female, age 42, unknown 58.6
2241 Male, age 72, unknown 57.4
1851 Male, age 51, unknown 54.3
1941 Male, age 53, unknown 53.6
1889 Female, age 72, unknown 53.4
2699 Male, age 18, unknown 52.8
2409 Female, age 72, unknown 52.2
2583 Male, age 75, right hemisphere 52.2
2665 Male, age 74, both hemispheres 51.8
2590 Female, age 75, unknown 51.2
Superior colliculus
nTPM: 52.4
1995 Male, age 72, unknown 54.7
2261 Male, age 18, unknown 53.4
1913 Female, age 42, unknown 53.2
2087 Female, age 72, unknown 52.8
2668 Female, age 75, unknown 52.3
1796 Male, age 53, unknown 52.1
2587 Male, age 74, left hemisphere 52.1
1839 Male, age 51, unknown 51.5
2664 Male, age 75, both hemispheres 51.5
1895 Male, age 76, right hemisphere 50.3
Ventral tegmental area
nTPM: 53.0
2410 Female, age 72, unknown 54.3
1915 Female, age 42, unknown 54.1
1942 Male, age 51, unknown 53.2
2021 Male, age 53, unknown 52.6
2223 Female, age 72, unknown 52.4
2218 Male, age 76, both hemispheres 51.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.5
Samples: 139

Max nTPM: 133.7
Min nTPM: 32.6
Std nTPM: 19.2
Median nTPM: 66.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 133.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 129.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 127.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 124.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 115.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 110.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 102.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 99.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 99.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 98.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 96.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 74.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.1
FF:10158-103A5 76 years, female 74.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.0
Pig sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.0
Samples: 3

Max nTPM: 0.0
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Substantia nigra
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.1
Sample D Male 0.0
Superior colliculi
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 112.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 112.5
Samples: 4

Max nTPM: 117.1
Min nTPM: 107.6
Sample A Male 113.1
Sample B Male 107.6
Sample C Female 117.1
Sample D Female 112.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
74800903 Antisense, RP_060315_02_A04, Mouse strain C57BL/6J (56 days, male) 1.9
386004 Antisense, RP_040625_01_H03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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