ABOUTMENU
HELP
NEWS
FXR1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:60.6 nTPM
HPA:60.6 nTPM
GTEx:51.8 nTPM
FANTOM5:252.5 Scaled Tags Per Million
Pig:69.8 nTPM
Mouse:77.5 nTPM
Allen mouse:5.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 60.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.9
1830 Male, age 51, unknown 62.0
1833 Male, age 53, unknown 61.6
1870 Female, age 42, unknown 60.6
2411 Female, age 72, unknown 60.6
2666 Male, age 74, left hemisphere 56.8
2219 Male, age 76, both hemispheres 53.9
2828 Female, age 72, unknown 53.5
1827 Male, age 72, unknown 52.8
2019 Male, age 18, unknown 52.7
2586 Male, age 75, left hemisphere 44.7
Dorsal raphe nucleus
nTPM: 58.7
2016 Female, age 72, unknown 60.5
2750 Male, age 76, both hemispheres 60.2
1828 Male, age 53, unknown 59.9
2047 Male, age 72, unknown 57.8
2298 Female, age 72, unknown 55.1
Inferior colliculus
nTPM: 55.3
2849 Male, age 72, unknown 58.1
1848 Female, age 42, unknown 57.3
1890 Male, age 53, unknown 53.6
2097 Female, age 72, unknown 52.0
Median raphe nucleus
nTPM: 60.6
2220 Male, age 76, midline 60.6
Pedunculopontine tegmental nucleus
nTPM: 58.3
2334 Male, age 80, both hemispheres 62.0
2338 Male, age 61, both hemispheres 58.3
1921 Female, age 85, both hemispheres 54.6
Periaquaductal grey, anterior
nTPM: 52.2
1947 Male, age 18, unknown 57.8
2502 Female, age 75, unknown 51.4
1795 Male, age 51, unknown 47.5
Periaquaductal grey, dorsal
nTPM: 57.0
2850 Male, age 76, both hemispheres 61.2
2464 Female, age 72, unknown 57.2
1840 Male, age 53, unknown 54.9
1831 Male, age 72, unknown 54.7
Periaquaductal grey, lateral
nTPM: 54.1
2140 Male, age 76, both hemispheres 56.1
2053 Male, age 18, unknown 55.0
2272 Male, age 74, both hemispheres 51.3
Pretectal area
nTPM: 54.0
2667 Female, age 75, unknown 58.0
2273 Male, age 74, both hemispheres 56.5
2224 Female, age 72, unknown 56.2
2825 Male, age 18, unknown 54.8
2316 Male, age 76, right hemisphere 54.7
1815 Male, age 53, unknown 54.3
2407 Male, age 75, both hemispheres 53.4
1817 Female, age 42, unknown 52.2
1944 Female, age 72, unknown 52.1
1816 Male, age 51, unknown 51.1
2007 Male, age 72, unknown 51.0
Red nucleus
nTPM: 59.3
1821 Female, age 72, unknown 63.2
1954 Female, age 42, unknown 62.9
2503 Female, age 72, unknown 62.6
1865 Male, age 51, unknown 60.6
1904 Male, age 53, unknown 59.7
2823 Male, age 76, right hemisphere 59.2
2588 Male, age 74, left hemisphere 58.6
2769 Male, age 72, unknown 58.6
2227 Male, age 72, unknown 58.5
2725 Female, age 75, unknown 57.0
2584 Male, age 75, left hemisphere 55.6
2785 Male, age 18, unknown 55.3
Substantia nigra
nTPM: 56.9
2241 Male, age 72, unknown 63.9
1941 Male, age 53, unknown 59.1
1916 Female, age 42, unknown 58.4
2699 Male, age 18, unknown 58.3
1889 Female, age 72, unknown 57.0
1851 Male, age 51, unknown 56.5
2409 Female, age 72, unknown 56.0
2590 Female, age 75, unknown 55.4
2583 Male, age 75, right hemisphere 54.1
2665 Male, age 74, both hemispheres 50.1
Superior colliculus
nTPM: 53.2
2587 Male, age 74, left hemisphere 60.0
1895 Male, age 76, right hemisphere 59.0
1839 Male, age 51, unknown 54.2
1995 Male, age 72, unknown 54.0
1913 Female, age 42, unknown 53.8
2668 Female, age 75, unknown 53.0
1796 Male, age 53, unknown 50.8
2261 Male, age 18, unknown 50.6
2087 Female, age 72, unknown 49.8
2664 Male, age 75, both hemispheres 47.2
Ventral tegmental area
nTPM: 57.6
2223 Female, age 72, unknown 59.8
2410 Female, age 72, unknown 59.8
1942 Male, age 51, unknown 57.8
1915 Female, age 42, unknown 57.5
2218 Male, age 76, both hemispheres 56.9
2021 Male, age 53, unknown 53.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.8
Samples: 139

Max nTPM: 113.3
Min nTPM: 33.3
Std nTPM: 13.8
Median nTPM: 48.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 113.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 108.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 104.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 91.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 87.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 83.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 80.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 80.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 78.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 77.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 75.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 252.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 252.5
FF:10158-103A5 76 years, female 252.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 69.8
Pig sample Sample description nTPM
Midbrain
nTPM: 69.8
Samples: 4

Max nTPM: 77.1
Min nTPM: 64.1
Sample A Female 77.1
Sample B Female 71.9
Sample C Male 64.1
Sample D Male 65.9
Periaqueductal gray
nTPM: 65.2
Samples: 3

Max nTPM: 66.7
Min nTPM: 63.0
Sample B Female 63.0
Sample C Male 65.9
Sample D Male 66.7
Substantia nigra
nTPM: 65.4
Samples: 4

Max nTPM: 73.0
Min nTPM: 57.3
Sample A Female 73.0
Sample B Female 57.3
Sample C Male 67.5
Sample D Male 63.7
Superior colliculi
nTPM: 65.7
Samples: 4

Max nTPM: 69.8
Min nTPM: 57.2
Sample A Female 67.2
Sample B Female 57.2
Sample C Male 68.4
Sample D Male 69.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 77.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 77.5
Samples: 4

Max nTPM: 82.2
Min nTPM: 69.7
Sample A Male 69.7
Sample B Male 80.0
Sample C Female 82.2
Sample D Female 78.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
69838756 Antisense, RP_050324_01_G08, Mouse strain C57BL/6J (56 days, male) 11.5
75931607 Antisense, RP_060606_01_D05, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.