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FXR1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:51.5 nTPM
HPA:51.5 nTPM
GTEx:38.5 nTPM
FANTOM5:196.0 Scaled Tags Per Million
Pig:63.0 nTPM
Mouse:53.9 nTPM
Allen mouse:6.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018246Antibody HPA055475
Glial cells Not detectedMedium
Neuronal cells HighMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 51.5
Sample id Sample description nTPM
Hippocampus
nTPM: 50.8
2529 Female, age 94, left hemisphere 54.3
1898 Male, age 80, left hemisphere 52.1
1911 Female, age 85, right hemisphere 52.0
1855 Male, age 76, left hemisphere 50.0
2621 Female, age 67, right hemisphere 49.0
2148 Female, age 91, left hemisphere 47.5
Dentate gyrus
nTPM: 49.8
2010 Male, age 76, both hemispheres 56.5
2530 Female, age 94, left hemisphere 50.4
2246 Female, age 85, both hemispheres 49.9
1927 Female, age 91, both hemispheres 48.9
2528 Male, age 74, both hemispheres 48.2
2531 Female, age 67, both hemispheres 44.8
Entorhinal gyrus
nTPM: 49.0
1938 Female, age 85, left hemisphere 52.4
2117 Female, age 91, right hemisphere 51.4
1787 Male, age 76, left hemisphere 49.6
2613 Female, age 94, left hemisphere 47.2
2686 Male, age 75, right hemisphere 47.0
2764 Male, age 80, right hemisphere 46.2
Hippocampus, CA1
nTPM: 50.8
2045 Male, age 76, both hemispheres 55.4
1873 Female, age 85, both hemispheres 52.8
2527 Male, age 74, both hemispheres 50.1
2082 Female, age 91, right hemisphere 48.5
2749 Male, age 80, left hemisphere 47.2
Hippocampus, CA2
nTPM: 49.6
2249 Male, age 74, both hemispheres 53.8
2113 Female, age 91, right hemisphere 51.6
1892 Male, age 76, both hemispheres 50.2
1940 Female, age 85, left hemisphere 48.5
1963 Male, age 80, left hemisphere 47.9
2437 Female, age 94, left hemisphere 45.7
Hippocampus, CA3
nTPM: 48.3
1891 Female, age 85, both hemispheres 50.9
2436 Male, age 74, both hemispheres 50.0
2620 Female, age 94, left hemisphere 49.9
1867 Male, age 76, both hemispheres 49.1
2137 Male, age 80, left hemisphere 47.9
2861 Female, age 67, both hemispheres 42.1
Parahippocampal cortex
nTPM: 51.5
2018 Male, age 76, both hemispheres 57.2
2532 Female, age 72, left hemisphere 53.9
2692 Male, age 74, both hemispheres 53.9
1850 Male, age 80, both hemispheres 53.5
2693 Female, age 94, both hemispheres 51.4
1933 Female, age 85, both hemispheres 50.5
1990 Female, age 91, right hemisphere 50.2
2250 Female, age 67, right hemisphere 49.0
2245 Female, age 91, both hemispheres 48.4
2622 Female, age 67, right hemisphere 47.4
Perirhinal gyrus
nTPM: 50.0
2848 Male, age 76, right hemisphere 53.3
1841 Female, age 85, right hemisphere 50.5
2521 Female, age 94, right hemisphere 49.2
1794 Male, age 80, right hemisphere 48.9
1847 Female, age 91, left hemisphere 48.2
Subiculum
nTPM: 51.2
2438 Female, age 94, left hemisphere 56.1
2042 Male, age 76, both hemispheres 56.0
1901 Male, age 80, both hemispheres 52.8
2729 Female, age 91, right hemisphere 48.4
1977 Female, age 85, both hemispheres 47.6
2619 Male, age 74, both hemispheres 46.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 38.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.5
Samples: 197

Max nTPM: 128.8
Min nTPM: 20.9
Std nTPM: 12.9
Median nTPM: 34.9
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 128.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 82.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 80.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 75.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 73.3
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 70.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 67.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 63.2
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 62.5
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 62.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 61.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 196.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 196.0
FF:10169-103B7 60 years, female 196.7
FF:10153-102I9 76 years, female 195.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 63.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 63.0
Samples: 4

Max nTPM: 72.2
Min nTPM: 55.3
Sample A Female 72.2
Sample B Female 58.9
Sample C Male 65.7
Sample D Male 55.3
Entorhinal cortex
nTPM: 53.4
Samples: 4

Max nTPM: 57.8
Min nTPM: 49.1
Sample A Female 55.5
Sample B Female 57.8
Sample C Male 51.0
Sample D Male 49.1
Subiculum
nTPM: 55.4
Samples: 4

Max nTPM: 63.9
Min nTPM: 51.0
Sample A Female 63.9
Sample B Female 51.0
Sample C Male 51.3
Sample D Male 55.4
Ventral hippocampus
nTPM: 54.4
Samples: 4

Max nTPM: 63.6
Min nTPM: 43.0
Sample A Female 63.6
Sample B Female 49.5
Sample C Male 43.0
Sample D Male 61.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 53.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 46.9
Samples: 4

Max nTPM: 48.8
Min nTPM: 44.1
Sample A Male 44.1
Sample B Male 47.1
Sample C Female 48.8
Sample D Female 47.7
Hippocampal formation
nTPM: 53.9
Samples: 4

Max nTPM: 56.0
Min nTPM: 51.8
Sample A Male 54.9
Sample B Male 51.8
Sample C Female 56.0
Sample D Female 52.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.3
69838756 Antisense, RP_050324_01_G08, Mouse strain C57BL/6J (56 days, male) 12.6
75931607 Antisense, RP_060606_01_D05, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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