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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:39.2 nTPM
HPA:39.2 nTPM
GTEx:41.9 nTPM
FANTOM5:71.0 Scaled Tags Per Million
Pig:29.6 nTPM
Mouse:21.5 nTPM
Allen mouse:0.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA034766Antibody HPA057246
Glial cells Not detectedLow
Neuronal cells MediumLow




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.2
1857 Female, age 85, left hemisphere 41.4
1854 Male, age 80, left hemisphere 39.6
2846 Female, age 79, unknown 39.4
2290 Female, age 72, unknown 38.4
2288 Male, age 75, left hemisphere 37.1
1781 Male, age 74, unknown 36.8
2289 Male, age 61, right hemisphere 36.7
2481 Female, age 94, left hemisphere 36.1
Claustrum
nTPM: 36.4
2284 Female, age 91, both hemispheres 37.4
2198 Male, age 80, both hemispheres 37.1
2196 Female, age 79, unknown 36.8
2568 Male, age 61, both hemispheres 36.7
2392 Female, age 94, both hemispheres 36.6
2491 Male, age 75, both hemispheres 36.3
1956 Male, age 74, unknown 35.9
2645 Female, age 72, unknown 35.9
2292 Female, age 85, both hemispheres 35.2
Globus pallidus, externus
nTPM: 35.1
2772 Female, age 79, unknown 36.8
2395 Male, age 75, both hemispheres 35.5
1996 Male, age 80, right hemisphere 34.7
2646 Male, age 61, right hemisphere 34.4
2567 Female, age 72, unknown 34.2
Globus pallidus, internus
nTPM: 35.6
2287 Male, age 75, right hemisphere 36.8
1818 Male, age 74, unknown 36.4
2566 Female, age 72, unknown 35.6
2778 Female, age 91, both hemispheres 35.6
2483 Female, age 94, right hemisphere 35.5
2111 Female, age 85, right hemisphere 34.8
2037 Male, age 80, right hemisphere 34.3
Nucleus accumbens
nTPM: 39.2
1856 Female, age 91, right hemisphere 42.2
2824 Male, age 61, right hemisphere 41.1
1806 Female, age 85, left hemisphere 40.6
1783 Male, age 74, unknown 39.4
2698 Female, age 72, unknown 39.2
2286 Male, age 75, left hemisphere 38.1
2732 Male, age 80, right hemisphere 36.9
2391 Female, age 94, left hemisphere 36.0
Nucleus basalis of Meynert
nTPM: 36.1
2393 Male, age 80, right hemisphere 37.4
2484 Female, age 94, left hemisphere 37.2
2821 Male, age 75, both hemispheres 35.9
2569 Male, age 61, both hemispheres 34.0
Nucleus of the diagonal band
nTPM: 37.9
1812 Female, age 91, both hemispheres 38.8
2775 Male, age 80, right hemisphere 38.7
2029 Male, age 61, right hemisphere 37.6
1979 Male, age 74, unknown 37.3
2195 Female, age 85, both hemispheres 37.0
Olfactory tubercle
nTPM: 37.4
1998 Female, age 91, both hemispheres 38.6
1846 Male, age 80, right hemisphere 37.8
2487 Female, age 94, left hemisphere 36.7
2856 Male, age 75, right hemisphere 36.6
Putamen
nTPM: 38.5
1838 Male, age 80, right hemisphere 42.9
1937 Female, age 91, right hemisphere 39.7
2466 Female, age 79, unknown 39.6
1829 Male, age 74, unknown 37.3
2482 Female, age 94, left hemisphere 36.9
2489 Female, age 72, unknown 36.6
2647 Male, age 75, left hemisphere 36.1
Septal nuclei
nTPM: 36.5
2031 Female, age 72, unknown 38.5
1960 Male, age 74, unknown 37.4
2009 Female, age 91, both hemispheres 37.1
2629 Female, age 94, right hemisphere 36.2
2394 Male, age 61, left hemisphere 35.8
2059 Female, age 85, both hemispheres 35.4
2199 Male, age 80, right hemisphere 35.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 41.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 35.3
Samples: 246

Max nTPM: 70.9
Min nTPM: 14.4
Std nTPM: 10.6
Median nTPM: 34.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 70.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 68.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 68.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 67.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 67.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 61.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 60.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 57.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 55.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 55.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 55.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 41.9
Samples: 246

Max nTPM: 83.5
Min nTPM: 19.6
Std nTPM: 11.3
Median nTPM: 40.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 83.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 74.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 73.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 71.8
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 71.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 66.6
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 64.0
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 63.3
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 63.3
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 62.2
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 61.2
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Brain - Putamen (basal ganglia)
Average nTPM: 36.4
Samples: 205

Max nTPM: 68.7
Min nTPM: 15.8
Std nTPM: 11.3
Median nTPM: 36.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 68.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 68.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 65.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 65.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 61.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 60.8
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 60.7
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 60.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 59.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 58.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 57.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 67.7
FF:10164-103B2 76 years, female 67.7
Globus pallidus
Scaled Tags Per Million: 68.8
FF:10175-103C4 60 years, female 91.5
FF:10161-103A8 76 years, female 46.0
Nucleus accumbens
Scaled Tags Per Million: 51.4
FF:10037-101F1 23-56 years, mixed 51.4
Putamen
Scaled Tags Per Million: 71.0
FF:10176-103C5 60 years, female 71.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 29.6
Pig sample Sample description nTPM
Caudate
nTPM: 23.7
Samples: 4

Max nTPM: 25.3
Min nTPM: 20.8
Sample A Female 25.3
Sample B Female 24.3
Sample C Male 24.2
Sample D Male 20.8
Putamen
nTPM: 29.0
Samples: 4

Max nTPM: 35.6
Min nTPM: 21.1
Sample A Female 35.6
Sample B Female 21.1
Sample C Male 29.9
Sample D Male 29.5
Septum
nTPM: 29.6
Samples: 4

Max nTPM: 35.1
Min nTPM: 26.0
Sample A Female 35.1
Sample B Female 26.0
Sample C Male 27.6
Sample D Male 29.8
Ventral pallidum
nTPM: 29.2
Samples: 4

Max nTPM: 32.3
Min nTPM: 25.9
Sample A Female 25.9
Sample B Female 26.7
Sample C Male 32.3
Sample D Male 31.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 21.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 21.5
Samples: 4

Max nTPM: 24.1
Min nTPM: 17.8
Sample A Male 24.1
Sample B Male 21.5
Sample C Female 22.7
Sample D Female 17.8
Septum
nTPM: 13.9
Samples: 4

Max nTPM: 15.6
Min nTPM: 12.9
Sample A Male 15.6
Sample B Male 13.6
Sample C Female 12.9
Sample D Female 13.6
Ventral forebrain
nTPM: 17.8
Samples: 4

Max nTPM: 18.7
Min nTPM: 15.9
Sample A Male 18.7
Sample B Male 18.5
Sample C Female 17.9
Sample D Female 15.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
69626861 Antisense, RP_050428_01_D08, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 0.3
69626861 Antisense, RP_050428_01_D08, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.