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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:72.0 nTPM
HPA:72.0 nTPM
GTEx:68.3 nTPM
FANTOM5:23.6 Scaled Tags Per Million
Pig:31.5 nTPM
Mouse:50.1 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA030259
Glial cells Not detected
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 72.0
Sample id Sample description nTPM
Hippocampus
nTPM: 59.8
2529 Female, age 94, left hemisphere 68.0
1911 Female, age 85, right hemisphere 63.9
2621 Female, age 67, right hemisphere 59.7
1855 Male, age 76, left hemisphere 56.6
1898 Male, age 80, left hemisphere 55.8
2148 Female, age 91, left hemisphere 54.6
Dentate gyrus
nTPM: 58.7
2530 Female, age 94, left hemisphere 75.8
2010 Male, age 76, both hemispheres 59.0
2528 Male, age 74, both hemispheres 58.3
2246 Female, age 85, both hemispheres 56.0
2531 Female, age 67, both hemispheres 53.5
1927 Female, age 91, both hemispheres 49.5
Entorhinal gyrus
nTPM: 63.1
2117 Female, age 91, right hemisphere 79.8
2764 Male, age 80, right hemisphere 70.9
2686 Male, age 75, right hemisphere 60.1
2613 Female, age 94, left hemisphere 58.0
1938 Female, age 85, left hemisphere 56.1
1787 Male, age 76, left hemisphere 53.9
Hippocampus, CA1
nTPM: 53.2
2527 Male, age 74, both hemispheres 59.5
2082 Female, age 91, right hemisphere 58.0
1873 Female, age 85, both hemispheres 54.6
2749 Male, age 80, left hemisphere 49.7
2045 Male, age 76, both hemispheres 44.0
Hippocampus, CA2
nTPM: 59.6
2437 Female, age 94, left hemisphere 67.6
1963 Male, age 80, left hemisphere 60.9
2249 Male, age 74, both hemispheres 60.9
2113 Female, age 91, right hemisphere 59.8
1940 Female, age 85, left hemisphere 59.3
1892 Male, age 76, both hemispheres 49.3
Hippocampus, CA3
nTPM: 53.4
1891 Female, age 85, both hemispheres 71.5
1867 Male, age 76, both hemispheres 55.1
2436 Male, age 74, both hemispheres 54.5
2620 Female, age 94, left hemisphere 46.7
2137 Male, age 80, left hemisphere 46.3
2861 Female, age 67, both hemispheres 46.3
Parahippocampal cortex
nTPM: 57.5
2692 Male, age 74, both hemispheres 73.4
2532 Female, age 72, left hemisphere 66.7
1990 Female, age 91, right hemisphere 62.6
1850 Male, age 80, both hemispheres 57.0
2245 Female, age 91, both hemispheres 56.4
1933 Female, age 85, both hemispheres 54.4
2018 Male, age 76, both hemispheres 53.8
2693 Female, age 94, both hemispheres 52.7
2250 Female, age 67, right hemisphere 49.3
2622 Female, age 67, right hemisphere 48.6
Perirhinal gyrus
nTPM: 49.0
2521 Female, age 94, right hemisphere 51.4
1794 Male, age 80, right hemisphere 50.0
2848 Male, age 76, right hemisphere 49.0
1847 Female, age 91, left hemisphere 48.8
1841 Female, age 85, right hemisphere 45.9
Subiculum
nTPM: 72.0
2042 Male, age 76, both hemispheres 85.6
1901 Male, age 80, both hemispheres 79.4
2438 Female, age 94, left hemisphere 75.3
2619 Male, age 74, both hemispheres 66.6
1977 Female, age 85, both hemispheres 65.6
2729 Female, age 91, right hemisphere 59.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 68.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 68.3
Samples: 197

Max nTPM: 216.4
Min nTPM: 14.0
Std nTPM: 40.7
Median nTPM: 57.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 216.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 213.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 211.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 201.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 198.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 180.2
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 173.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 169.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 153.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 147.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 141.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 23.6
FF:10153-102I9 76 years, female 32.6
FF:10169-103B7 60 years, female 14.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 31.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 31.5
Samples: 4

Max nTPM: 46.2
Min nTPM: 11.1
Sample A Female 46.2
Sample B Female 25.7
Sample C Male 42.9
Sample D Male 11.1
Entorhinal cortex
nTPM: 14.2
Samples: 4

Max nTPM: 19.9
Min nTPM: 11.1
Sample A Female 11.1
Sample B Female 19.9
Sample C Male 12.9
Sample D Male 12.9
Subiculum
nTPM: 14.9
Samples: 4

Max nTPM: 17.3
Min nTPM: 12.6
Sample A Female 16.1
Sample B Female 17.3
Sample C Male 12.6
Sample D Male 13.5
Ventral hippocampus
nTPM: 24.0
Samples: 4

Max nTPM: 28.6
Min nTPM: 13.8
Sample A Female 27.0
Sample B Female 13.8
Sample C Male 26.4
Sample D Male 28.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 50.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 49.8
Samples: 4

Max nTPM: 61.7
Min nTPM: 35.3
Sample A Male 57.8
Sample B Male 61.7
Sample C Female 44.5
Sample D Female 35.3
Hippocampal formation
nTPM: 50.2
Samples: 4

Max nTPM: 58.8
Min nTPM: 41.2
Sample A Male 41.2
Sample B Male 48.7
Sample C Female 51.9
Sample D Female 58.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
80471950 Antisense, RP_070208_04_E06, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

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