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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:95.5 nTPM
HPA:95.5 nTPM
GTEx:77.9 nTPM
FANTOM5:81.3 Scaled Tags Per Million
Pig:63.0 nTPM
Mouse:45.6 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 95.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.6
1830 Male, age 51, unknown 92.7
1833 Male, age 53, unknown 89.7
1870 Female, age 42, unknown 87.6
2411 Female, age 72, unknown 83.8
2019 Male, age 18, unknown 82.6
2828 Female, age 72, unknown 79.4
2666 Male, age 74, left hemisphere 73.8
2219 Male, age 76, both hemispheres 71.4
2586 Male, age 75, left hemisphere 69.7
1827 Male, age 72, unknown 65.1
Dorsal raphe nucleus
nTPM: 68.4
2750 Male, age 76, both hemispheres 94.1
1828 Male, age 53, unknown 69.4
2016 Female, age 72, unknown 65.8
2047 Male, age 72, unknown 58.7
2298 Female, age 72, unknown 53.7
Inferior colliculus
nTPM: 63.4
2849 Male, age 72, unknown 69.5
1848 Female, age 42, unknown 65.3
1890 Male, age 53, unknown 63.2
2097 Female, age 72, unknown 55.5
Median raphe nucleus
nTPM: 64.9
2220 Male, age 76, midline 64.9
Pedunculopontine tegmental nucleus
nTPM: 75.9
2338 Male, age 61, both hemispheres 79.7
2334 Male, age 80, both hemispheres 78.7
1921 Female, age 85, both hemispheres 69.2
Periaquaductal grey, anterior
nTPM: 60.7
2502 Female, age 75, unknown 61.9
1947 Male, age 18, unknown 61.8
1795 Male, age 51, unknown 58.3
Periaquaductal grey, dorsal
nTPM: 56.4
2464 Female, age 72, unknown 65.6
1831 Male, age 72, unknown 59.3
2850 Male, age 76, both hemispheres 52.8
1840 Male, age 53, unknown 48.1
Periaquaductal grey, lateral
nTPM: 58.9
2272 Male, age 74, both hemispheres 63.4
2053 Male, age 18, unknown 61.2
2140 Male, age 76, both hemispheres 52.1
Pretectal area
nTPM: 65.5
2316 Male, age 76, right hemisphere 78.4
1815 Male, age 53, unknown 75.4
2407 Male, age 75, both hemispheres 73.7
2667 Female, age 75, unknown 69.7
1817 Female, age 42, unknown 68.1
2825 Male, age 18, unknown 67.4
2007 Male, age 72, unknown 65.0
2224 Female, age 72, unknown 58.8
2273 Male, age 74, both hemispheres 58.6
1944 Female, age 72, unknown 53.9
1816 Male, age 51, unknown 51.4
Red nucleus
nTPM: 95.5
2823 Male, age 76, right hemisphere 118.2
1865 Male, age 51, unknown 110.1
1904 Male, age 53, unknown 105.5
1821 Female, age 72, unknown 102.3
2769 Male, age 72, unknown 97.8
2227 Male, age 72, unknown 95.4
2785 Male, age 18, unknown 93.0
2503 Female, age 72, unknown 91.0
1954 Female, age 42, unknown 89.8
2588 Male, age 74, left hemisphere 86.8
2584 Male, age 75, left hemisphere 78.4
2725 Female, age 75, unknown 77.9
Substantia nigra
nTPM: 68.4
2699 Male, age 18, unknown 77.4
2409 Female, age 72, unknown 76.3
2583 Male, age 75, right hemisphere 75.0
1851 Male, age 51, unknown 74.3
1889 Female, age 72, unknown 69.8
2590 Female, age 75, unknown 69.4
2665 Male, age 74, both hemispheres 63.2
2241 Male, age 72, unknown 60.8
1941 Male, age 53, unknown 60.2
1916 Female, age 42, unknown 57.9
Superior colliculus
nTPM: 72.9
1913 Female, age 42, unknown 93.3
1995 Male, age 72, unknown 88.2
1895 Male, age 76, right hemisphere 83.9
2587 Male, age 74, left hemisphere 74.8
1839 Male, age 51, unknown 74.4
2668 Female, age 75, unknown 73.3
1796 Male, age 53, unknown 65.5
2664 Male, age 75, both hemispheres 64.4
2087 Female, age 72, unknown 56.3
2261 Male, age 18, unknown 55.0
Ventral tegmental area
nTPM: 71.2
2223 Female, age 72, unknown 83.6
2410 Female, age 72, unknown 74.1
2021 Male, age 53, unknown 71.0
2218 Male, age 76, both hemispheres 67.1
1942 Male, age 51, unknown 65.9
1915 Female, age 42, unknown 65.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 77.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.9
Samples: 139

Max nTPM: 216.0
Min nTPM: 30.8
Std nTPM: 40.1
Median nTPM: 68.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 216.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 214.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 212.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 210.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 180.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 177.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 165.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 162.0
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 158.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 151.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 150.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 81.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 81.3
FF:10158-103A5 76 years, female 81.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.0
Pig sample Sample description nTPM
Midbrain
nTPM: 61.6
Samples: 4

Max nTPM: 106.7
Min nTPM: 35.0
Sample A Female 106.7
Sample B Female 63.7
Sample C Male 35.0
Sample D Male 40.9
Periaqueductal gray
nTPM: 43.9
Samples: 3

Max nTPM: 53.1
Min nTPM: 36.8
Sample B Female 53.1
Sample C Male 36.8
Sample D Male 41.7
Substantia nigra
nTPM: 63.0
Samples: 4

Max nTPM: 92.9
Min nTPM: 46.2
Sample A Female 60.5
Sample B Female 46.2
Sample C Male 52.3
Sample D Male 92.9
Superior colliculi
nTPM: 49.1
Samples: 4

Max nTPM: 60.0
Min nTPM: 30.3
Sample A Female 56.4
Sample B Female 30.3
Sample C Male 49.7
Sample D Male 60.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 45.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.7
Samples: 4

Max nTPM: 51.0
Min nTPM: 36.4
Sample A Male 51.0
Sample B Male 36.4
Sample C Female 47.1
Sample D Female 48.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
80471950 Antisense, RP_070208_04_E06, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.