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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:141.5 nTPM
HPA:141.5 nTPM
GTEx:163.5 nTPM
FANTOM5:538.3 Scaled Tags Per Million
Pig:118.2 nTPM
Mouse:29.8 nTPM
Allen mouse:13.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 141.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 129.2
1870 Female, age 42, unknown 137.1
2666 Male, age 74, left hemisphere 136.6
2219 Male, age 76, both hemispheres 131.6
2586 Male, age 75, left hemisphere 130.5
1833 Male, age 53, unknown 130.0
1830 Male, age 51, unknown 129.3
2828 Female, age 72, unknown 127.6
1827 Male, age 72, unknown 124.3
2019 Male, age 18, unknown 123.1
2411 Female, age 72, unknown 122.0
Dorsal raphe nucleus
nTPM: 113.0
1828 Male, age 53, unknown 120.4
2750 Male, age 76, both hemispheres 116.4
2016 Female, age 72, unknown 116.0
2047 Male, age 72, unknown 111.6
2298 Female, age 72, unknown 100.6
Inferior colliculus
nTPM: 124.8
2849 Male, age 72, unknown 144.4
1890 Male, age 53, unknown 125.1
1848 Female, age 42, unknown 120.4
2097 Female, age 72, unknown 109.5
Median raphe nucleus
nTPM: 130.7
2220 Male, age 76, midline 130.7
Pedunculopontine tegmental nucleus
nTPM: 128.4
2338 Male, age 61, both hemispheres 136.3
2334 Male, age 80, both hemispheres 136.2
1921 Female, age 85, both hemispheres 112.8
Periaquaductal grey, anterior
nTPM: 122.2
2502 Female, age 75, unknown 129.5
1947 Male, age 18, unknown 121.0
1795 Male, age 51, unknown 116.2
Periaquaductal grey, dorsal
nTPM: 124.8
2850 Male, age 76, both hemispheres 138.4
1831 Male, age 72, unknown 124.4
2464 Female, age 72, unknown 120.5
1840 Male, age 53, unknown 115.7
Periaquaductal grey, lateral
nTPM: 116.7
2140 Male, age 76, both hemispheres 122.4
2053 Male, age 18, unknown 116.4
2272 Male, age 74, both hemispheres 111.2
Pretectal area
nTPM: 122.9
1817 Female, age 42, unknown 135.9
1815 Male, age 53, unknown 133.1
2407 Male, age 75, both hemispheres 131.7
1816 Male, age 51, unknown 127.2
1944 Female, age 72, unknown 127.2
2007 Male, age 72, unknown 127.2
2825 Male, age 18, unknown 126.3
2273 Male, age 74, both hemispheres 113.6
2224 Female, age 72, unknown 110.9
2667 Female, age 75, unknown 110.2
2316 Male, age 76, right hemisphere 108.3
Red nucleus
nTPM: 141.5
2503 Female, age 72, unknown 172.7
2725 Female, age 75, unknown 158.7
2588 Male, age 74, left hemisphere 152.5
1865 Male, age 51, unknown 148.5
1954 Female, age 42, unknown 137.6
2823 Male, age 76, right hemisphere 136.5
1904 Male, age 53, unknown 135.5
2227 Male, age 72, unknown 133.3
2584 Male, age 75, left hemisphere 132.3
2769 Male, age 72, unknown 130.9
1821 Female, age 72, unknown 130.5
2785 Male, age 18, unknown 128.4
Substantia nigra
nTPM: 122.7
2699 Male, age 18, unknown 141.4
1889 Female, age 72, unknown 126.7
1941 Male, age 53, unknown 126.5
2665 Male, age 74, both hemispheres 125.4
2590 Female, age 75, unknown 123.0
1916 Female, age 42, unknown 121.4
1851 Male, age 51, unknown 121.1
2583 Male, age 75, right hemisphere 119.3
2241 Male, age 72, unknown 111.9
2409 Female, age 72, unknown 110.3
Superior colliculus
nTPM: 123.5
2587 Male, age 74, left hemisphere 135.9
1913 Female, age 42, unknown 132.2
1995 Male, age 72, unknown 132.1
1895 Male, age 76, right hemisphere 126.0
1839 Male, age 51, unknown 121.9
1796 Male, age 53, unknown 120.0
2261 Male, age 18, unknown 119.5
2087 Female, age 72, unknown 119.2
2668 Female, age 75, unknown 115.6
2664 Male, age 75, both hemispheres 112.8
Ventral tegmental area
nTPM: 122.9
2223 Female, age 72, unknown 131.6
2218 Male, age 76, both hemispheres 129.9
1915 Female, age 42, unknown 122.7
1942 Male, age 51, unknown 120.1
2410 Female, age 72, unknown 118.4
2021 Male, age 53, unknown 114.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 163.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 163.5
Samples: 139

Max nTPM: 287.8
Min nTPM: 98.7
Std nTPM: 35.0
Median nTPM: 160.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 287.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 278.9
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 253.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 250.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 240.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 233.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 224.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 221.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 221.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 219.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 218.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 538.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 538.3
FF:10158-103A5 76 years, female 538.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 118.2
Pig sample Sample description nTPM
Midbrain
nTPM: 118.2
Samples: 4

Max nTPM: 179.2
Min nTPM: 90.3
Sample A Female 179.2
Sample B Female 106.6
Sample C Male 96.7
Sample D Male 90.3
Periaqueductal gray
nTPM: 98.2
Samples: 3

Max nTPM: 107.6
Min nTPM: 90.9
Sample B Female 96.2
Sample C Male 107.6
Sample D Male 90.9
Substantia nigra
nTPM: 103.6
Samples: 4

Max nTPM: 115.2
Min nTPM: 88.7
Sample A Female 106.6
Sample B Female 88.7
Sample C Male 103.8
Sample D Male 115.2
Superior colliculi
nTPM: 105.4
Samples: 4

Max nTPM: 114.0
Min nTPM: 86.4
Sample A Female 114.0
Sample B Female 86.4
Sample C Male 111.0
Sample D Male 110.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.8
Samples: 4

Max nTPM: 32.1
Min nTPM: 26.4
Sample A Male 26.4
Sample B Male 32.1
Sample C Female 31.3
Sample D Female 29.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.0
68442979 Antisense, RP_050111_01_B06, Mouse strain C57BL/6J (56 days, male) 13.0

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The Human Protein Atlas project is funded
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