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FNDC4
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.5 nTPM
HPA:57.5 nTPM
GTEx:43.0 nTPM
FANTOM5:10.3 Scaled Tags Per Million
Pig:23.4 nTPM
Mouse:75.2 nTPM
Allen mouse:9.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 57.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.3
2586 Male, age 75, left hemisphere 85.5
2019 Male, age 18, unknown 58.6
2666 Male, age 74, left hemisphere 57.6
1827 Male, age 72, unknown 51.5
1833 Male, age 53, unknown 51.4
2828 Female, age 72, unknown 51.2
1830 Male, age 51, unknown 50.8
2411 Female, age 72, unknown 49.8
2219 Male, age 76, both hemispheres 48.5
1870 Female, age 42, unknown 48.2
Dorsal raphe nucleus
nTPM: 56.9
1828 Male, age 53, unknown 69.5
2047 Male, age 72, unknown 61.6
2016 Female, age 72, unknown 51.2
2750 Male, age 76, both hemispheres 51.1
2298 Female, age 72, unknown 50.9
Inferior colliculus
nTPM: 54.9
1848 Female, age 42, unknown 56.7
2849 Male, age 72, unknown 55.7
2097 Female, age 72, unknown 54.9
1890 Male, age 53, unknown 52.2
Median raphe nucleus
nTPM: 54.3
2220 Male, age 76, midline 54.3
Pedunculopontine tegmental nucleus
nTPM: 50.6
2334 Male, age 80, both hemispheres 54.1
1921 Female, age 85, both hemispheres 49.3
2338 Male, age 61, both hemispheres 48.4
Periaquaductal grey, anterior
nTPM: 53.4
2502 Female, age 75, unknown 54.9
1795 Male, age 51, unknown 52.9
1947 Male, age 18, unknown 52.4
Periaquaductal grey, dorsal
nTPM: 51.6
2850 Male, age 76, both hemispheres 56.4
1840 Male, age 53, unknown 50.5
2464 Female, age 72, unknown 50.1
1831 Male, age 72, unknown 49.6
Periaquaductal grey, lateral
nTPM: 50.6
2140 Male, age 76, both hemispheres 56.5
2053 Male, age 18, unknown 49.0
2272 Male, age 74, both hemispheres 46.2
Pretectal area
nTPM: 55.5
1944 Female, age 72, unknown 68.4
1816 Male, age 51, unknown 63.4
1817 Female, age 42, unknown 62.4
2007 Male, age 72, unknown 61.6
1815 Male, age 53, unknown 55.7
2825 Male, age 18, unknown 52.8
2407 Male, age 75, both hemispheres 52.3
2316 Male, age 76, right hemisphere 52.1
2667 Female, age 75, unknown 48.6
2273 Male, age 74, both hemispheres 47.4
2224 Female, age 72, unknown 46.0
Red nucleus
nTPM: 53.1
2584 Male, age 75, left hemisphere 61.1
2785 Male, age 18, unknown 56.0
2227 Male, age 72, unknown 53.2
2588 Male, age 74, left hemisphere 53.2
1821 Female, age 72, unknown 53.0
2769 Male, age 72, unknown 52.8
1954 Female, age 42, unknown 52.5
2725 Female, age 75, unknown 52.2
2503 Female, age 72, unknown 51.9
2823 Male, age 76, right hemisphere 51.1
1904 Male, age 53, unknown 50.7
1865 Male, age 51, unknown 49.4
Substantia nigra
nTPM: 57.5
1941 Male, age 53, unknown 68.8
2583 Male, age 75, right hemisphere 60.8
1889 Female, age 72, unknown 59.9
1916 Female, age 42, unknown 59.4
1851 Male, age 51, unknown 56.9
2590 Female, age 75, unknown 56.2
2665 Male, age 74, both hemispheres 55.8
2699 Male, age 18, unknown 54.4
2241 Male, age 72, unknown 51.4
2409 Female, age 72, unknown 50.9
Superior colliculus
nTPM: 55.6
2664 Male, age 75, both hemispheres 64.5
2668 Female, age 75, unknown 63.2
2087 Female, age 72, unknown 61.5
1839 Male, age 51, unknown 55.9
2261 Male, age 18, unknown 53.9
1995 Male, age 72, unknown 53.3
1895 Male, age 76, right hemisphere 52.8
1796 Male, age 53, unknown 51.2
1913 Female, age 42, unknown 50.0
2587 Male, age 74, left hemisphere 49.5
Ventral tegmental area
nTPM: 51.6
1915 Female, age 42, unknown 54.8
2410 Female, age 72, unknown 53.6
2223 Female, age 72, unknown 53.0
1942 Male, age 51, unknown 51.1
2218 Male, age 76, both hemispheres 50.7
2021 Male, age 53, unknown 46.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.0
Samples: 139

Max nTPM: 153.7
Min nTPM: 9.7
Std nTPM: 21.9
Median nTPM: 39.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 153.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 144.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 131.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 126.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 88.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 87.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 75.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 68.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 68.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 68.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 68.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.3
FF:10158-103A5 76 years, female 10.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.4
Pig sample Sample description nTPM
Midbrain
nTPM: 19.6
Samples: 4

Max nTPM: 42.3
Min nTPM: 7.2
Sample A Female 7.2
Sample B Female 14.8
Sample C Male 42.3
Sample D Male 13.9
Periaqueductal gray
nTPM: 14.5
Samples: 3

Max nTPM: 17.8
Min nTPM: 10.7
Sample B Female 15.0
Sample C Male 17.8
Sample D Male 10.7
Substantia nigra
nTPM: 14.5
Samples: 4

Max nTPM: 23.1
Min nTPM: 6.3
Sample A Female 23.1
Sample B Female 11.2
Sample C Male 17.4
Sample D Male 6.3
Superior colliculi
nTPM: 23.4
Samples: 4

Max nTPM: 41.3
Min nTPM: 15.1
Sample A Female 15.1
Sample B Female 18.4
Sample C Male 41.3
Sample D Male 18.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 75.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 75.2
Samples: 4

Max nTPM: 82.1
Min nTPM: 70.7
Sample A Male 82.1
Sample B Male 70.7
Sample C Female 72.0
Sample D Female 76.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.3
293665 Antisense, RP_040604_02_H04, Mouse strain C57BL/6J (56 days, male) 10.0
74357604 Antisense, RP_060119_03_A07, Mouse strain C57BL/6J (56 days, male) 8.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.