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FNDC4
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:58.9 nTPM
HPA:58.9 nTPM
GTEx:57.9 nTPM
FANTOM5:23.4 Scaled Tags Per Million
Pig:22.7 nTPM
Mouse:91.7 nTPM
Allen mouse:12.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051804Antibody HPA063581
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 58.9
Sample id Sample description nTPM
Hippocampus
nTPM: 58.2
2621 Female, age 67, right hemisphere 65.0
1898 Male, age 80, left hemisphere 59.4
1911 Female, age 85, right hemisphere 59.2
2529 Female, age 94, left hemisphere 58.4
2148 Female, age 91, left hemisphere 54.3
1855 Male, age 76, left hemisphere 52.7
Dentate gyrus
nTPM: 56.8
2530 Female, age 94, left hemisphere 64.6
1927 Female, age 91, both hemispheres 60.6
2010 Male, age 76, both hemispheres 56.2
2528 Male, age 74, both hemispheres 56.0
2531 Female, age 67, both hemispheres 54.1
2246 Female, age 85, both hemispheres 49.0
Entorhinal gyrus
nTPM: 56.3
2613 Female, age 94, left hemisphere 63.6
2686 Male, age 75, right hemisphere 59.2
2764 Male, age 80, right hemisphere 54.5
2117 Female, age 91, right hemisphere 54.4
1787 Male, age 76, left hemisphere 53.1
1938 Female, age 85, left hemisphere 52.7
Hippocampus, CA1
nTPM: 58.9
2749 Male, age 80, left hemisphere 80.9
2527 Male, age 74, both hemispheres 59.8
1873 Female, age 85, both hemispheres 56.1
2082 Female, age 91, right hemisphere 49.3
2045 Male, age 76, both hemispheres 48.4
Hippocampus, CA2
nTPM: 57.7
1963 Male, age 80, left hemisphere 70.8
2437 Female, age 94, left hemisphere 63.0
2249 Male, age 74, both hemispheres 57.2
1892 Male, age 76, both hemispheres 55.8
2113 Female, age 91, right hemisphere 51.3
1940 Female, age 85, left hemisphere 48.2
Hippocampus, CA3
nTPM: 56.7
2137 Male, age 80, left hemisphere 68.9
2861 Female, age 67, both hemispheres 61.9
1867 Male, age 76, both hemispheres 53.6
1891 Female, age 85, both hemispheres 52.8
2620 Female, age 94, left hemisphere 52.0
2436 Male, age 74, both hemispheres 51.1
Parahippocampal cortex
nTPM: 55.1
2622 Female, age 67, right hemisphere 60.9
2245 Female, age 91, both hemispheres 59.4
2532 Female, age 72, left hemisphere 57.8
2692 Male, age 74, both hemispheres 55.8
1990 Female, age 91, right hemisphere 55.4
2250 Female, age 67, right hemisphere 55.1
2693 Female, age 94, both hemispheres 52.8
1850 Male, age 80, both hemispheres 52.4
1933 Female, age 85, both hemispheres 51.5
2018 Male, age 76, both hemispheres 50.5
Perirhinal gyrus
nTPM: 52.4
1847 Female, age 91, left hemisphere 55.5
1841 Female, age 85, right hemisphere 54.3
1794 Male, age 80, right hemisphere 52.5
2521 Female, age 94, right hemisphere 51.0
2848 Male, age 76, right hemisphere 48.8
Subiculum
nTPM: 56.3
2438 Female, age 94, left hemisphere 59.9
1901 Male, age 80, both hemispheres 59.8
2619 Male, age 74, both hemispheres 59.2
1977 Female, age 85, both hemispheres 54.7
2729 Female, age 91, right hemisphere 53.1
2042 Male, age 76, both hemispheres 51.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 57.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 57.9
Samples: 197

Max nTPM: 195.1
Min nTPM: 15.6
Std nTPM: 28.4
Median nTPM: 52.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 195.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 143.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 140.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 139.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 135.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 130.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 115.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 115.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 114.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 114.4
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 112.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 23.4
FF:10153-102I9 76 years, female 24.9
FF:10169-103B7 60 years, female 21.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 22.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 19.9
Samples: 4

Max nTPM: 29.0
Min nTPM: 9.2
Sample A Female 22.0
Sample B Female 19.2
Sample C Male 29.0
Sample D Male 9.2
Entorhinal cortex
nTPM: 22.7
Samples: 4

Max nTPM: 28.3
Min nTPM: 18.0
Sample A Female 23.7
Sample B Female 28.3
Sample C Male 20.6
Sample D Male 18.0
Subiculum
nTPM: 14.7
Samples: 4

Max nTPM: 17.9
Min nTPM: 11.0
Sample A Female 17.9
Sample B Female 12.5
Sample C Male 17.4
Sample D Male 11.0
Ventral hippocampus
nTPM: 16.5
Samples: 4

Max nTPM: 25.2
Min nTPM: 10.3
Sample A Female 10.3
Sample B Female 13.7
Sample C Male 16.7
Sample D Male 25.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 91.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 91.7
Samples: 4

Max nTPM: 93.7
Min nTPM: 88.0
Sample A Male 88.0
Sample B Male 93.7
Sample C Female 92.4
Sample D Female 92.6
Hippocampal formation
nTPM: 88.7
Samples: 4

Max nTPM: 100.4
Min nTPM: 77.4
Sample A Male 100.4
Sample B Male 84.4
Sample C Female 77.4
Sample D Female 92.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 12.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.2
74357604 Antisense, RP_060119_03_A07, Mouse strain C57BL/6J (56 days, male) 12.8
293665 Antisense, RP_040604_02_H04, Mouse strain C57BL/6J (56 days, male) 11.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.