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KDM3A
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.4 nTPM
HPA:17.4 nTPM
GTEx:12.7 nTPM
FANTOM5:52.5 Scaled Tags Per Million
Pig:11.1 nTPM
Mouse:11.4 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.7
1870 Female, age 42, unknown 17.6
2828 Female, age 72, unknown 17.5
2586 Male, age 75, left hemisphere 17.0
2411 Female, age 72, unknown 16.1
1830 Male, age 51, unknown 16.0
1833 Male, age 53, unknown 15.5
1827 Male, age 72, unknown 15.4
2019 Male, age 18, unknown 15.3
2666 Male, age 74, left hemisphere 14.4
2219 Male, age 76, both hemispheres 12.6
Dorsal raphe nucleus
nTPM: 16.9
2016 Female, age 72, unknown 18.2
2298 Female, age 72, unknown 18.0
1828 Male, age 53, unknown 17.1
2047 Male, age 72, unknown 16.7
2750 Male, age 76, both hemispheres 14.4
Inferior colliculus
nTPM: 16.3
1848 Female, age 42, unknown 16.7
2849 Male, age 72, unknown 16.4
2097 Female, age 72, unknown 16.3
1890 Male, age 53, unknown 15.8
Median raphe nucleus
nTPM: 17.4
2220 Male, age 76, midline 17.4
Pedunculopontine tegmental nucleus
nTPM: 15.0
1921 Female, age 85, both hemispheres 15.4
2338 Male, age 61, both hemispheres 14.9
2334 Male, age 80, both hemispheres 14.7
Periaquaductal grey, anterior
nTPM: 15.1
1795 Male, age 51, unknown 15.7
2502 Female, age 75, unknown 15.1
1947 Male, age 18, unknown 14.6
Periaquaductal grey, dorsal
nTPM: 16.2
1831 Male, age 72, unknown 16.5
1840 Male, age 53, unknown 16.2
2850 Male, age 76, both hemispheres 16.2
2464 Female, age 72, unknown 15.9
Periaquaductal grey, lateral
nTPM: 16.8
2272 Male, age 74, both hemispheres 16.9
2053 Male, age 18, unknown 16.8
2140 Male, age 76, both hemispheres 16.8
Pretectal area
nTPM: 15.7
2273 Male, age 74, both hemispheres 17.5
2667 Female, age 75, unknown 17.0
2224 Female, age 72, unknown 16.4
2316 Male, age 76, right hemisphere 16.0
1817 Female, age 42, unknown 15.4
1816 Male, age 51, unknown 15.3
2407 Male, age 75, both hemispheres 15.3
2825 Male, age 18, unknown 15.2
1815 Male, age 53, unknown 15.1
1944 Female, age 72, unknown 14.8
2007 Male, age 72, unknown 14.6
Red nucleus
nTPM: 16.7
2503 Female, age 72, unknown 19.0
1954 Female, age 42, unknown 18.7
1821 Female, age 72, unknown 18.4
2769 Male, age 72, unknown 17.7
1904 Male, age 53, unknown 17.2
2227 Male, age 72, unknown 16.8
2785 Male, age 18, unknown 16.2
1865 Male, age 51, unknown 16.1
2588 Male, age 74, left hemisphere 15.8
2725 Female, age 75, unknown 15.3
2823 Male, age 76, right hemisphere 14.9
2584 Male, age 75, left hemisphere 14.1
Substantia nigra
nTPM: 15.3
2590 Female, age 75, unknown 17.0
2699 Male, age 18, unknown 16.5
1916 Female, age 42, unknown 15.5
1889 Female, age 72, unknown 15.3
2665 Male, age 74, both hemispheres 15.1
2409 Female, age 72, unknown 14.9
2583 Male, age 75, right hemisphere 14.9
1851 Male, age 51, unknown 14.8
2241 Male, age 72, unknown 14.6
1941 Male, age 53, unknown 13.8
Superior colliculus
nTPM: 15.9
1913 Female, age 42, unknown 17.7
1796 Male, age 53, unknown 16.8
1995 Male, age 72, unknown 16.4
2261 Male, age 18, unknown 16.4
2664 Male, age 75, both hemispheres 16.2
2087 Female, age 72, unknown 16.0
2587 Male, age 74, left hemisphere 16.0
1839 Male, age 51, unknown 15.7
2668 Female, age 75, unknown 14.3
1895 Male, age 76, right hemisphere 13.6
Ventral tegmental area
nTPM: 15.3
2223 Female, age 72, unknown 16.4
2021 Male, age 53, unknown 16.2
1942 Male, age 51, unknown 15.8
1915 Female, age 42, unknown 14.9
2410 Female, age 72, unknown 14.6
2218 Male, age 76, both hemispheres 13.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.7
Samples: 139

Max nTPM: 32.7
Min nTPM: 2.3
Std nTPM: 4.2
Median nTPM: 12.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 32.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 27.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 24.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 21.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 21.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 20.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 19.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 19.5
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 19.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 19.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 18.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.5
FF:10158-103A5 76 years, female 52.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.1
Pig sample Sample description nTPM
Midbrain
nTPM: 10.8
Samples: 4

Max nTPM: 12.9
Min nTPM: 9.5
Sample A Female 12.9
Sample B Female 10.9
Sample C Male 10.0
Sample D Male 9.5
Periaqueductal gray
nTPM: 10.0
Samples: 3

Max nTPM: 10.8
Min nTPM: 9.3
Sample B Female 10.8
Sample C Male 9.9
Sample D Male 9.3
Substantia nigra
nTPM: 11.1
Samples: 4

Max nTPM: 11.7
Min nTPM: 10.2
Sample A Female 11.3
Sample B Female 10.2
Sample C Male 11.0
Sample D Male 11.7
Superior colliculi
nTPM: 10.4
Samples: 4

Max nTPM: 10.8
Min nTPM: 9.5
Sample A Female 10.8
Sample B Female 9.5
Sample C Male 10.7
Sample D Male 10.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.4
Samples: 4

Max nTPM: 11.6
Min nTPM: 11.1
Sample A Male 11.5
Sample B Male 11.6
Sample C Female 11.4
Sample D Female 11.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68844570 Antisense, RP_050222_02_A01, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.