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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.4 nTPM
HPA:65.4 nTPM
GTEx:61.9 nTPM
FANTOM5:134.9 Scaled Tags Per Million
Mouse:70.7 nTPM
Allen mouse:10.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 65.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.7
2019 Male, age 18, unknown 73.2
2586 Male, age 75, left hemisphere 66.3
2666 Male, age 74, left hemisphere 63.7
1827 Male, age 72, unknown 58.1
2828 Female, age 72, unknown 57.7
1833 Male, age 53, unknown 55.0
1870 Female, age 42, unknown 54.7
1830 Male, age 51, unknown 52.2
2411 Female, age 72, unknown 52.0
2219 Male, age 76, both hemispheres 44.5
Dorsal raphe nucleus
nTPM: 57.7
2047 Male, age 72, unknown 61.0
1828 Male, age 53, unknown 58.0
2298 Female, age 72, unknown 57.4
2750 Male, age 76, both hemispheres 56.3
2016 Female, age 72, unknown 56.0
Inferior colliculus
nTPM: 50.2
1890 Male, age 53, unknown 55.4
1848 Female, age 42, unknown 50.2
2849 Male, age 72, unknown 48.4
2097 Female, age 72, unknown 47.0
Median raphe nucleus
nTPM: 54.3
2220 Male, age 76, midline 54.3
Pedunculopontine tegmental nucleus
nTPM: 56.7
2338 Male, age 61, both hemispheres 68.2
2334 Male, age 80, both hemispheres 54.6
1921 Female, age 85, both hemispheres 47.3
Periaquaductal grey, anterior
nTPM: 56.7
1795 Male, age 51, unknown 58.4
1947 Male, age 18, unknown 56.8
2502 Female, age 75, unknown 54.9
Periaquaductal grey, dorsal
nTPM: 53.6
2850 Male, age 76, both hemispheres 60.4
1840 Male, age 53, unknown 54.9
1831 Male, age 72, unknown 49.6
2464 Female, age 72, unknown 49.4
Periaquaductal grey, lateral
nTPM: 57.8
2272 Male, age 74, both hemispheres 63.6
2140 Male, age 76, both hemispheres 60.4
2053 Male, age 18, unknown 49.6
Pretectal area
nTPM: 58.9
1816 Male, age 51, unknown 70.6
2007 Male, age 72, unknown 69.7
1817 Female, age 42, unknown 67.7
1944 Female, age 72, unknown 65.0
1815 Male, age 53, unknown 62.0
2273 Male, age 74, both hemispheres 56.7
2667 Female, age 75, unknown 56.2
2407 Male, age 75, both hemispheres 55.2
2224 Female, age 72, unknown 50.2
2316 Male, age 76, right hemisphere 48.4
2825 Male, age 18, unknown 46.8
Red nucleus
nTPM: 59.3
2588 Male, age 74, left hemisphere 66.7
2785 Male, age 18, unknown 66.4
2584 Male, age 75, left hemisphere 63.6
1904 Male, age 53, unknown 61.0
2725 Female, age 75, unknown 59.3
1865 Male, age 51, unknown 58.9
2503 Female, age 72, unknown 57.8
1821 Female, age 72, unknown 57.4
2823 Male, age 76, right hemisphere 56.2
1954 Female, age 42, unknown 56.0
2227 Male, age 72, unknown 54.1
2769 Male, age 72, unknown 53.8
Substantia nigra
nTPM: 65.4
1916 Female, age 42, unknown 73.5
1851 Male, age 51, unknown 71.6
2409 Female, age 72, unknown 67.8
2590 Female, age 75, unknown 66.2
2241 Male, age 72, unknown 66.1
1941 Male, age 53, unknown 64.9
1889 Female, age 72, unknown 63.8
2699 Male, age 18, unknown 62.9
2665 Male, age 74, both hemispheres 59.5
2583 Male, age 75, right hemisphere 57.6
Superior colliculus
nTPM: 56.2
2587 Male, age 74, left hemisphere 59.5
2668 Female, age 75, unknown 59.4
2087 Female, age 72, unknown 58.3
1995 Male, age 72, unknown 57.9
2261 Male, age 18, unknown 57.9
2664 Male, age 75, both hemispheres 57.2
1913 Female, age 42, unknown 56.3
1796 Male, age 53, unknown 55.6
1895 Male, age 76, right hemisphere 51.7
1839 Male, age 51, unknown 48.4
Ventral tegmental area
nTPM: 56.8
2410 Female, age 72, unknown 68.2
1915 Female, age 42, unknown 61.5
2218 Male, age 76, both hemispheres 58.0
2223 Female, age 72, unknown 53.0
1942 Male, age 51, unknown 52.2
2021 Male, age 53, unknown 48.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 61.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.9
Samples: 139

Max nTPM: 88.4
Min nTPM: 39.4
Std nTPM: 8.7
Median nTPM: 61.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 88.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 83.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 82.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 81.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 80.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 77.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 76.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 76.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 76.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 75.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 75.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 134.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 134.9
FF:10158-103A5 76 years, female 134.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 70.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 70.7
Samples: 4

Max nTPM: 76.9
Min nTPM: 61.9
Sample A Male 61.9
Sample B Male 72.1
Sample C Female 76.9
Sample D Female 71.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.2
74819232 Antisense, RP_060315_02_B08, Mouse strain C57BL/6J (56 days, male) 12.2
77932809 Antisense, RP_070320_02_C02, Mouse strain C57BL/6J (56 days, male) 8.1

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