Single cell type - TAF1B - The Human Protein Atlas

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	TAF1B
Gene descriptionⁱ Full gene name according to HGNC.	TATA-box binding protein associated factor, RNA polymerase I subunit B
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular,Membrane
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	3

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type expression clusterⁱ The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity. Read more	Non-specific - Transcription (mainly)
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low cell type specificity
Immune cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low immune cell specificity
Immune cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in many
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines. Read more	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines. Read more	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (nTPM) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Low cell type specificity

SINGLE CELL TISSUES OVERVIEWⁱ An overview of all tissues where single cell type expression has been analyzed. Each tissue name and corresponding UMAP plot is clickable and redirects to the selected tissue.
Adipose tissue Bone marrow Brain Breast Bronchus Colon Endometrium Esophagus Eye Heart muscle Kidney Liver Lung Lymph node Ovary Pancreas Placenta Prostate Rectum Skeletal muscle Skin Small intestine Spleen Stomach Testis

EXPRESSION CLUSTERING & CORRELATIONⁱ

TAF1B is part of cluster 59 Non-specific - Transcription with confidenceⁱ 0.98
354 genes in cluster

Go to interactive expression cluster page

15 nearest neighbours based on single cell type RNA expression

Neighbourⁱ Gene name according to HGNC.	Descriptionⁱ Gene description according to HGNC.	Correlationⁱ Correlation between the selected gene and neighboring gene. Correlation is calculated as Spearman correlation in PCA space based on the RNA-seq expression data. Read more	Clusterⁱ ID of the expression cluster of the neighboring gene. Read more
ZFR	Zinc finger RNA binding protein	0.4798	10
UHRF1BP1L	UHRF1 binding protein 1 like	0.4644	21
CWC22	CWC22 spliceosome associated protein homolog	0.4603	50
TAF2	TATA-box binding protein associated factor 2	0.4559	59
GTF2H3	General transcription factor IIH subunit 3	0.4523	59
PRPF40A	Pre-mRNA processing factor 40 homolog A	0.4424	10
SLC8A2	Solute carrier family 8 member A2	0.4420	21
RBM14-RBM4	RBM14-RBM4 readthrough	0.4412	59
CFAP54	Cilia and flagella associated protein 54	0.4385	49
ICE1	Interactor of little elongation complex ELL subunit 1	0.4337	52
NUP54	Nucleoporin 54	0.4272	44
L3HYPDH	Trans-L-3-hydroxyproline dehydratase	0.4242	67
NAT10	N-acetyltransferase 10	0.4215	59
ANKRD13C	Ankyrin repeat domain 13C	0.4202	42
SYT4	Synaptotagmin 4	0.4157	56

SINGLE CELL TISSUESⁱ Single cell RNA levels of annotated cell type clusters are shown separately for each analyzed tissue. For easier navigation across tissues, use the above Single cell tissue overview, where each tissue name and UMAP plot is clickable and redirects to the selected tissue, alternatively the grey browser on the left side of the window. Barchart shows nTPM levels in each annotated cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Adipose tissue
Cluster Expression Alphabetical Bone marrow
Cluster Expression Alphabetical Brain
Cluster Expression Alphabetical Breast
Cluster Expression Alphabetical Bronchus
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Endometrium
Cluster Expression Alphabetical Esophagus
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Lymph node
Cluster Expression Alphabetical Ovary
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skeletal muscle
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Spleen
Cluster Expression Alphabetical Stomach
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ

Organ

Expression

Alphabetical

Adipocytes	12.5 nTPM
Adipose tissue	14.2 nTPM
Breast	10.9 nTPM

Alveolar cells type 1	19.2 nTPM
Lung	19.2 nTPM

Alveolar cells type 2	22.0 nTPM
Lung	22.0 nTPM

Astrocytes	22.2 nTPM
Brain	22.2 nTPM

B-cells	13.1 nTPM
Liver	18.1 nTPM
Stomach	17.7 nTPM
Spleen	16.9 nTPM
Lymph node	15.0 nTPM
Adipose tissue	14.6 nTPM
PBMC	12.9 nTPM
Bone marrow	11.5 nTPM
Colon	11.2 nTPM
Breast	8.1 nTPM
Kidney	4.8 nTPM

Dendritic cells	12.6 nTPM
Adipose tissue	23.7 nTPM
Breast	14.2 nTPM
PBMC	0.0 nTPM

Endothelial cells	15.4 nTPM
Prostate	28.4 nTPM
Lung	28.1 nTPM
Pancreas	19.3 nTPM
Endometrium	16.2 nTPM
Skin	16.0 nTPM
Ovary	15.4 nTPM
Testis	13.9 nTPM
Eye	13.7 nTPM
Heart muscle	13.4 nTPM
Skeletal muscle	12.5 nTPM
Esophagus	12.4 nTPM
Placenta	11.9 nTPM
Breast	8.7 nTPM
Liver	5.5 nTPM

Fibroblasts	18.4 nTPM
Lung	50.3 nTPM
Adipose tissue	24.2 nTPM
Skeletal muscle	24.0 nTPM
Ovary	17.0 nTPM
Stomach	16.3 nTPM
Placenta	15.9 nTPM
Esophagus	12.7 nTPM
Skin	11.6 nTPM
Breast	11.0 nTPM
Prostate	10.3 nTPM
Heart muscle	9.7 nTPM

Intestinal goblet cells	3.3 nTPM
Rectum	4.5 nTPM
Colon	2.9 nTPM
Small intestine	2.4 nTPM

Macrophages	14.6 nTPM
Lung	34.7 nTPM
Spleen	21.8 nTPM
Stomach	17.6 nTPM
Bone marrow	17.5 nTPM
Skeletal muscle	16.5 nTPM
Adipose tissue	15.4 nTPM
Endometrium	14.7 nTPM
Kidney	14.3 nTPM
Ovary	13.9 nTPM
Pancreas	12.8 nTPM
Testis	11.7 nTPM
Esophagus	11.0 nTPM
Prostate	9.1 nTPM
Breast	8.5 nTPM
PBMC	0.0 nTPM

Paneth cells	3.8 nTPM
Rectum	4.4 nTPM
Small intestine	3.7 nTPM
Colon	3.3 nTPM

Plasma cells	16.6 nTPM
Spleen	32.8 nTPM
Bone marrow	19.8 nTPM
Adipose tissue	16.7 nTPM
Stomach	13.5 nTPM
Esophagus	0.0 nTPM

Respiratory ciliated cells	29.7 nTPM
Lung	43.7 nTPM
Bronchus	15.8 nTPM

Smooth muscle cells	16.2 nTPM
Endometrium	24.0 nTPM
Adipose tissue	20.3 nTPM
Skeletal muscle	19.0 nTPM
Heart muscle	17.8 nTPM
Pancreas	17.5 nTPM
Prostate	15.0 nTPM
Ovary	14.9 nTPM
Esophagus	14.0 nTPM
Breast	13.1 nTPM
Bronchus	12.3 nTPM
Skin	9.8 nTPM

T-cells	15.1 nTPM
Bone marrow	25.7 nTPM
Adipose tissue	19.8 nTPM
Lung	19.7 nTPM
Spleen	19.7 nTPM
Stomach	19.7 nTPM
Colon	18.1 nTPM
Skeletal muscle	17.9 nTPM
Kidney	17.8 nTPM
Endometrium	15.7 nTPM
PBMC	15.1 nTPM
Lymph node	15.0 nTPM
Prostate	14.2 nTPM
Ovary	13.4 nTPM
Breast	10.0 nTPM
Liver	8.8 nTPM
Skin	6.0 nTPM
Esophagus	0.0 nTPM

Basal prostatic cells	29.9 nTPM
Prostate	29.9 nTPM

Basal squamous epithelial cells	19.9 nTPM
Esophagus	19.9 nTPM

Cholangiocytes	2.8 nTPM
Liver	2.8 nTPM

Cone photoreceptor cells	27.1 nTPM
Eye	27.1 nTPM

Undifferentiated cells	4.4 nTPM
Small intestine	5.2 nTPM
Rectum	5.2 nTPM
Colon	2.7 nTPM

Adipose tissue

Bone marrow

Brain

Breast

Bronchus

Colon

Endometrium

Esophagus

Eye

Heart muscle

Kidney

Liver

Lung

Lymph node

Ovary

Pancreas

Placenta

Prostate

Rectum

Skeletal muscle

Skin

Small intestine

Spleen

Stomach

Testis

PBMC