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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.2 nTPM
HPA:31.2 nTPM
GTEx:45.5 nTPM
FANTOM5:60.3 Scaled Tags Per Million
Pig:42.4 nTPM
Mouse:67.3 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.3
1870 Female, age 42, unknown 29.6
2828 Female, age 72, unknown 28.4
2019 Male, age 18, unknown 28.3
2411 Female, age 72, unknown 27.7
1833 Male, age 53, unknown 26.5
1827 Male, age 72, unknown 26.2
2666 Male, age 74, left hemisphere 25.4
1830 Male, age 51, unknown 24.5
2219 Male, age 76, both hemispheres 24.4
2586 Male, age 75, left hemisphere 22.4
Dorsal raphe nucleus
nTPM: 30.9
2298 Female, age 72, unknown 34.6
2016 Female, age 72, unknown 32.2
2047 Male, age 72, unknown 31.5
1828 Male, age 53, unknown 29.1
2750 Male, age 76, both hemispheres 26.9
Inferior colliculus
nTPM: 29.2
2097 Female, age 72, unknown 31.9
1848 Female, age 42, unknown 29.2
1890 Male, age 53, unknown 29.0
2849 Male, age 72, unknown 26.7
Median raphe nucleus
nTPM: 31.2
2220 Male, age 76, midline 31.2
Pedunculopontine tegmental nucleus
nTPM: 29.2
1921 Female, age 85, both hemispheres 29.8
2338 Male, age 61, both hemispheres 29.3
2334 Male, age 80, both hemispheres 28.6
Periaquaductal grey, anterior
nTPM: 25.4
1947 Male, age 18, unknown 26.1
1795 Male, age 51, unknown 25.0
2502 Female, age 75, unknown 25.0
Periaquaductal grey, dorsal
nTPM: 30.2
1840 Male, age 53, unknown 33.2
2850 Male, age 76, both hemispheres 31.4
1831 Male, age 72, unknown 29.0
2464 Female, age 72, unknown 27.2
Periaquaductal grey, lateral
nTPM: 29.6
2140 Male, age 76, both hemispheres 31.6
2053 Male, age 18, unknown 29.6
2272 Male, age 74, both hemispheres 27.6
Pretectal area
nTPM: 28.8
2273 Male, age 74, both hemispheres 32.8
1817 Female, age 42, unknown 30.7
2224 Female, age 72, unknown 30.2
2667 Female, age 75, unknown 29.8
1944 Female, age 72, unknown 29.1
2007 Male, age 72, unknown 29.0
1815 Male, age 53, unknown 28.5
2316 Male, age 76, right hemisphere 27.7
2825 Male, age 18, unknown 27.2
1816 Male, age 51, unknown 26.2
2407 Male, age 75, both hemispheres 25.1
Red nucleus
nTPM: 29.6
1865 Male, age 51, unknown 34.0
2503 Female, age 72, unknown 32.5
1954 Female, age 42, unknown 31.8
1821 Female, age 72, unknown 31.5
1904 Male, age 53, unknown 31.5
2769 Male, age 72, unknown 30.6
2725 Female, age 75, unknown 30.5
2823 Male, age 76, right hemisphere 29.3
2227 Male, age 72, unknown 28.4
2785 Male, age 18, unknown 26.4
2588 Male, age 74, left hemisphere 25.1
2584 Male, age 75, left hemisphere 23.5
Substantia nigra
nTPM: 28.7
2699 Male, age 18, unknown 31.7
1889 Female, age 72, unknown 31.2
1916 Female, age 42, unknown 30.4
2665 Male, age 74, both hemispheres 29.0
1851 Male, age 51, unknown 28.6
2241 Male, age 72, unknown 28.3
2409 Female, age 72, unknown 28.3
2590 Female, age 75, unknown 27.9
1941 Male, age 53, unknown 27.1
2583 Male, age 75, right hemisphere 24.7
Superior colliculus
nTPM: 26.7
1913 Female, age 42, unknown 30.4
2587 Male, age 74, left hemisphere 29.1
1995 Male, age 72, unknown 28.6
1895 Male, age 76, right hemisphere 27.2
2087 Female, age 72, unknown 27.1
1839 Male, age 51, unknown 26.0
1796 Male, age 53, unknown 25.8
2668 Female, age 75, unknown 25.5
2261 Male, age 18, unknown 25.1
2664 Male, age 75, both hemispheres 21.8
Ventral tegmental area
nTPM: 29.2
1942 Male, age 51, unknown 30.9
1915 Female, age 42, unknown 29.8
2410 Female, age 72, unknown 29.4
2218 Male, age 76, both hemispheres 28.5
2021 Male, age 53, unknown 28.2
2223 Female, age 72, unknown 28.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.5
Samples: 139

Max nTPM: 81.3
Min nTPM: 22.2
Std nTPM: 12.2
Median nTPM: 43.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 81.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 81.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 77.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 77.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 74.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 73.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 71.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 70.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 69.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 66.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 66.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.3
FF:10158-103A5 76 years, female 60.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.4
Pig sample Sample description nTPM
Midbrain
nTPM: 42.4
Samples: 4

Max nTPM: 70.5
Min nTPM: 27.0
Sample A Female 70.5
Sample B Female 40.3
Sample C Male 31.8
Sample D Male 27.0
Periaqueductal gray
nTPM: 35.2
Samples: 3

Max nTPM: 36.5
Min nTPM: 34.1
Sample B Female 35.1
Sample C Male 34.1
Sample D Male 36.5
Substantia nigra
nTPM: 37.3
Samples: 4

Max nTPM: 41.5
Min nTPM: 31.6
Sample A Female 41.5
Sample B Female 35.5
Sample C Male 31.6
Sample D Male 40.5
Superior colliculi
nTPM: 35.2
Samples: 4

Max nTPM: 37.7
Min nTPM: 31.7
Sample A Female 37.7
Sample B Female 31.7
Sample C Male 36.4
Sample D Male 34.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 67.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 67.3
Samples: 4

Max nTPM: 70.9
Min nTPM: 65.7
Sample A Male 65.7
Sample B Male 66.9
Sample C Female 70.9
Sample D Female 65.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
71656067 Antisense, RP_050927_03_E08, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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