ABOUTMENU
HELP
NEWS
EPAS1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.6 nTPM
HPA:48.6 nTPM
GTEx:44.5 nTPM
FANTOM5:333.5 Scaled Tags Per Million
Pig:66.0 nTPM
Mouse:53.1 nTPM
Allen mouse:4.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 48.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.0
2290 Female, age 72, unknown 47.9
2846 Female, age 79, unknown 43.7
1857 Female, age 85, left hemisphere 41.9
2481 Female, age 94, left hemisphere 39.2
1854 Male, age 80, left hemisphere 39.1
2288 Male, age 75, left hemisphere 32.0
1781 Male, age 74, unknown 31.8
2289 Male, age 61, right hemisphere 28.0
Claustrum
nTPM: 26.6
2645 Female, age 72, unknown 37.9
2196 Female, age 79, unknown 33.5
2292 Female, age 85, both hemispheres 28.8
2284 Female, age 91, both hemispheres 26.3
2568 Male, age 61, both hemispheres 25.2
2198 Male, age 80, both hemispheres 23.9
1956 Male, age 74, unknown 23.2
2392 Female, age 94, both hemispheres 21.1
2491 Male, age 75, both hemispheres 19.5
Globus pallidus, externus
nTPM: 37.2
2646 Male, age 61, right hemisphere 50.8
1996 Male, age 80, right hemisphere 38.4
2567 Female, age 72, unknown 37.2
2772 Female, age 79, unknown 34.9
2395 Male, age 75, both hemispheres 25.0
Globus pallidus, internus
nTPM: 36.1
2483 Female, age 94, right hemisphere 43.3
2287 Male, age 75, right hemisphere 39.4
1818 Male, age 74, unknown 39.2
2037 Male, age 80, right hemisphere 37.1
2111 Female, age 85, right hemisphere 34.8
2778 Female, age 91, both hemispheres 31.3
2566 Female, age 72, unknown 27.7
Nucleus accumbens
nTPM: 30.3
1806 Female, age 85, left hemisphere 38.1
1783 Male, age 74, unknown 33.5
2698 Female, age 72, unknown 32.9
2286 Male, age 75, left hemisphere 32.6
2391 Female, age 94, left hemisphere 31.5
1856 Female, age 91, right hemisphere 28.2
2824 Male, age 61, right hemisphere 24.7
2732 Male, age 80, right hemisphere 21.3
Nucleus basalis of Meynert
nTPM: 48.6
2569 Male, age 61, both hemispheres 64.0
2484 Female, age 94, left hemisphere 54.7
2821 Male, age 75, both hemispheres 38.7
2393 Male, age 80, right hemisphere 36.7
Nucleus of the diagonal band
nTPM: 21.2
2195 Female, age 85, both hemispheres 23.9
1979 Male, age 74, unknown 23.0
2029 Male, age 61, right hemisphere 22.2
2775 Male, age 80, right hemisphere 19.6
1812 Female, age 91, both hemispheres 17.3
Olfactory tubercle
nTPM: 22.6
2856 Male, age 75, right hemisphere 31.7
1846 Male, age 80, right hemisphere 23.3
1998 Female, age 91, both hemispheres 20.2
2487 Female, age 94, left hemisphere 15.2
Putamen
nTPM: 39.1
2489 Female, age 72, unknown 53.4
1838 Male, age 80, right hemisphere 40.4
2466 Female, age 79, unknown 39.2
2482 Female, age 94, left hemisphere 38.9
2647 Male, age 75, left hemisphere 37.6
1829 Male, age 74, unknown 35.5
1937 Female, age 91, right hemisphere 28.9
Septal nuclei
nTPM: 24.3
2394 Male, age 61, left hemisphere 34.5
2199 Male, age 80, right hemisphere 30.3
2059 Female, age 85, both hemispheres 27.3
2031 Female, age 72, unknown 26.0
1960 Male, age 74, unknown 24.8
2009 Female, age 91, both hemispheres 14.9
2629 Female, age 94, right hemisphere 12.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.3
Samples: 246

Max nTPM: 119.1
Min nTPM: 5.7
Std nTPM: 17.6
Median nTPM: 37.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 119.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 92.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 87.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 86.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 86.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 84.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 77.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 77.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 77.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 76.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 75.4
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.2
Samples: 246

Max nTPM: 153.4
Min nTPM: 3.0
Std nTPM: 20.3
Median nTPM: 26.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 153.4
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 124.0
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 115.2
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 105.4
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 92.9
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 89.4
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 82.9
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 82.0
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 79.7
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 77.7
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 74.3
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 44.5
Samples: 205

Max nTPM: 110.6
Min nTPM: 9.9
Std nTPM: 22.1
Median nTPM: 40.3
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 110.6
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 104.5
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 104.1
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 102.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 101.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 99.9
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 95.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 95.1
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 89.8
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 89.1
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 85.8
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 333.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 201.4
FF:10164-103B2 76 years, female 201.4
Globus pallidus
Scaled Tags Per Million: 333.5
FF:10175-103C4 60 years, female 408.1
FF:10161-103A8 76 years, female 258.9
Nucleus accumbens
Scaled Tags Per Million: 252.3
FF:10037-101F1 23-56 years, mixed 252.3
Putamen
Scaled Tags Per Million: 270.8
FF:10176-103C5 60 years, female 270.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 66.0
Pig sample Sample description nTPM
Caudate
nTPM: 47.7
Samples: 4

Max nTPM: 57.1
Min nTPM: 34.0
Sample A Female 34.0
Sample B Female 45.4
Sample C Male 57.1
Sample D Male 54.3
Putamen
nTPM: 66.0
Samples: 4

Max nTPM: 82.4
Min nTPM: 54.1
Sample A Female 54.8
Sample B Female 54.1
Sample C Male 82.4
Sample D Male 72.6
Septum
nTPM: 49.4
Samples: 4

Max nTPM: 69.2
Min nTPM: 42.1
Sample A Female 42.1
Sample B Female 44.0
Sample C Male 69.2
Sample D Male 42.3
Ventral pallidum
nTPM: 53.4
Samples: 4

Max nTPM: 74.3
Min nTPM: 40.5
Sample A Female 40.5
Sample B Female 51.3
Sample C Male 74.3
Sample D Male 47.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 53.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 53.1
Samples: 4

Max nTPM: 55.0
Min nTPM: 51.1
Sample A Male 51.1
Sample B Male 53.6
Sample C Female 55.0
Sample D Female 52.8
Septum
nTPM: 40.6
Samples: 4

Max nTPM: 46.2
Min nTPM: 36.3
Sample A Male 41.8
Sample B Male 38.0
Sample C Female 36.3
Sample D Female 46.2
Ventral forebrain
nTPM: 48.4
Samples: 4

Max nTPM: 49.9
Min nTPM: 47.1
Sample A Male 49.9
Sample B Male 47.1
Sample C Female 49.0
Sample D Female 47.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.5
69015278 Antisense, RP_050310_02_F06, Mouse strain C57BL/6J (56 days, male) 4.5
Pallidum
Expression energy: 3.7
69015278 Antisense, RP_050310_02_F06, Mouse strain C57BL/6J (56 days, male) 3.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.