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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.2 nTPM
HPA:54.2 nTPM
GTEx:39.8 nTPM
FANTOM5:201.1 Scaled Tags Per Million
Pig:90.6 nTPM
Mouse:51.5 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.8
2666 Male, age 74, left hemisphere 59.5
2586 Male, age 75, left hemisphere 51.2
2828 Female, age 72, unknown 49.3
1870 Female, age 42, unknown 44.5
1833 Male, age 53, unknown 44.1
2019 Male, age 18, unknown 42.6
1830 Male, age 51, unknown 41.5
2411 Female, age 72, unknown 41.1
2219 Male, age 76, both hemispheres 34.2
1827 Male, age 72, unknown 30.2
Dorsal raphe nucleus
nTPM: 41.1
2750 Male, age 76, both hemispheres 47.9
2047 Male, age 72, unknown 47.3
1828 Male, age 53, unknown 45.2
2016 Female, age 72, unknown 34.3
2298 Female, age 72, unknown 30.7
Inferior colliculus
nTPM: 42.2
1890 Male, age 53, unknown 47.9
1848 Female, age 42, unknown 42.0
2097 Female, age 72, unknown 41.7
2849 Male, age 72, unknown 37.1
Median raphe nucleus
nTPM: 43.5
2220 Male, age 76, midline 43.5
Pedunculopontine tegmental nucleus
nTPM: 42.4
2334 Male, age 80, both hemispheres 51.2
2338 Male, age 61, both hemispheres 40.1
1921 Female, age 85, both hemispheres 36.1
Periaquaductal grey, anterior
nTPM: 34.3
2502 Female, age 75, unknown 39.1
1947 Male, age 18, unknown 36.7
1795 Male, age 51, unknown 27.0
Periaquaductal grey, dorsal
nTPM: 30.4
2464 Female, age 72, unknown 39.4
2850 Male, age 76, both hemispheres 28.7
1831 Male, age 72, unknown 27.7
1840 Male, age 53, unknown 25.8
Periaquaductal grey, lateral
nTPM: 26.7
2053 Male, age 18, unknown 28.6
2140 Male, age 76, both hemispheres 26.0
2272 Male, age 74, both hemispheres 25.4
Pretectal area
nTPM: 31.6
1817 Female, age 42, unknown 52.3
2007 Male, age 72, unknown 43.3
1815 Male, age 53, unknown 36.1
1944 Female, age 72, unknown 33.4
1816 Male, age 51, unknown 33.3
2667 Female, age 75, unknown 30.6
2825 Male, age 18, unknown 29.9
2316 Male, age 76, right hemisphere 29.3
2224 Female, age 72, unknown 28.2
2273 Male, age 74, both hemispheres 16.7
2407 Male, age 75, both hemispheres 14.1
Red nucleus
nTPM: 54.2
1954 Female, age 42, unknown 70.5
2769 Male, age 72, unknown 64.5
2227 Male, age 72, unknown 62.1
2588 Male, age 74, left hemisphere 62.0
2823 Male, age 76, right hemisphere 58.7
1821 Female, age 72, unknown 55.5
1904 Male, age 53, unknown 54.4
1865 Male, age 51, unknown 53.2
2503 Female, age 72, unknown 49.2
2785 Male, age 18, unknown 43.8
2725 Female, age 75, unknown 38.5
2584 Male, age 75, left hemisphere 38.4
Substantia nigra
nTPM: 38.2
2665 Male, age 74, both hemispheres 78.2
1916 Female, age 42, unknown 41.1
1889 Female, age 72, unknown 39.5
1851 Male, age 51, unknown 38.2
2699 Male, age 18, unknown 37.2
2241 Male, age 72, unknown 32.1
2590 Female, age 75, unknown 31.3
2409 Female, age 72, unknown 30.7
1941 Male, age 53, unknown 28.9
2583 Male, age 75, right hemisphere 24.9
Superior colliculus
nTPM: 32.8
2668 Female, age 75, unknown 44.5
2587 Male, age 74, left hemisphere 40.8
2087 Female, age 72, unknown 39.2
2261 Male, age 18, unknown 34.0
1895 Male, age 76, right hemisphere 33.4
1839 Male, age 51, unknown 33.3
1913 Female, age 42, unknown 29.4
1796 Male, age 53, unknown 29.1
1995 Male, age 72, unknown 26.2
2664 Male, age 75, both hemispheres 18.2
Ventral tegmental area
nTPM: 38.8
2218 Male, age 76, both hemispheres 44.1
1942 Male, age 51, unknown 41.8
2223 Female, age 72, unknown 41.4
2021 Male, age 53, unknown 38.9
2410 Female, age 72, unknown 36.2
1915 Female, age 42, unknown 30.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.8
Samples: 139

Max nTPM: 162.9
Min nTPM: 3.0
Std nTPM: 22.7
Median nTPM: 36.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 162.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 116.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 106.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 99.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 91.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 85.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 83.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 80.6
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 80.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 79.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 79.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 201.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 201.1
FF:10158-103A5 76 years, female 201.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 90.6
Pig sample Sample description nTPM
Midbrain
nTPM: 70.7
Samples: 4

Max nTPM: 81.3
Min nTPM: 59.7
Sample A Female 81.3
Sample B Female 68.6
Sample C Male 73.1
Sample D Male 59.7
Periaqueductal gray
nTPM: 46.5
Samples: 3

Max nTPM: 51.5
Min nTPM: 37.1
Sample B Female 51.5
Sample C Male 51.0
Sample D Male 37.1
Substantia nigra
nTPM: 90.7
Samples: 4

Max nTPM: 110.4
Min nTPM: 77.4
Sample A Female 77.4
Sample B Female 110.4
Sample C Male 85.8
Sample D Male 89.0
Superior colliculi
nTPM: 74.7
Samples: 4

Max nTPM: 89.7
Min nTPM: 67.6
Sample A Female 69.4
Sample B Female 67.6
Sample C Male 72.0
Sample D Male 89.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.5
Samples: 4

Max nTPM: 54.6
Min nTPM: 49.0
Sample A Male 54.6
Sample B Male 49.0
Sample C Female 50.7
Sample D Female 51.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
69015278 Antisense, RP_050310_02_F06, Mouse strain C57BL/6J (56 days, male) 5.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.